Sean,
Keen eye, there. Some representations are not selectable, like
surfaces, and apparently transparent spheres. One trick/workaround is
to show sticks and then spheres with transparency. If you need to
hide the sticks, just set stick_transparency to 1.0. Here's an
example,
load $TUT/1hpv.pdb
as sticks
set stick_transparency, 1
show spheres
set sphere_transparency, 0.5
# now select something
Hope this helps,
-- Jason
On Wed, Mar 31, 2010 at 10:34 AM, Sean Law <mag...@ho...> wrote:
> Hi All,
>
> I'm not sure if this is a bug in PyMOL but I found that when you make a
> selection, show it as spheres representation, and then turn on the
> transparency (to anything but "off"), none of the now transparent spheres be
> selected via a mouse-click in the viewing area. Thus, if I selected 5
> atoms, showed them in spheres representation, turned on sphere transparency,
> then I would not be able to click on those spheres to select or deselect
> them. However, turning off transparency renders those atoms clickable
> again.
>
> Is this normal?
>
> Sean
>
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--
Jason Vertrees, PhD
PyMOL Product Manager
Schrodinger, LLC
(e) Jas...@sc...
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