Dear All, I want to create molecule in Pymol by combining 3 different pdbs. Two of them are form the pdb data bank and one was created via pymol. I have the 3 of them open in pymol but now I am trying to figure out how to connect the termini of the polypeptides in pymol. I searched the wiki/manuals and the web but could not find a way how to do it. Is it possible to do it using pymol? if yes what are the commands to do so ? Thanks! Best Afonso
Hi Afonso, If you want to connect one object to another, you want to check out the fuse command (help fuse) fuse atom_to_be_connected_from_object1, atom_to_be_connected_from_object2 Hope it helps, Tsjerk On Sun, Mar 28, 2010 at 4:33 PM, Afonso Duarte <afo...@gm...> wrote: > Dear All, > > I want to create molecule in Pymol by combining 3 different pdbs. > Two of them are form the pdb data bank and one was created via pymol. > I have the 3 of them open in pymol but now I am trying to figure out > how to connect the termini of the polypeptides in pymol. > > I searched the wiki/manuals and the web but could not find a way how > to do it. Is it possible to do it using pymol? if yes what are the > commands to do so ? > > Thanks! > > Best > > Afonso > > ------------------------------------------------------------------------------ > Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev > _______________________________________________ > PyMOL-users mailing list (PyM...@li...) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pym...@li... > -- Tsjerk A. Wassenaar, Ph.D. post-doctoral researcher Molecular Dynamics Group Groningen Institute for Biomolecular Research and Biotechnology University of Groningen The Netherlands
Hi Tsjerk, It did work! Thanks! Afonso On Sun, Mar 28, 2010 at 7:05 PM, Tsjerk Wassenaar <ts...@gm...> wrote: > Hi Afonso, > > If you want to connect one object to another, you want to check out > the fuse command (help fuse) > > fuse atom_to_be_connected_from_object1, atom_to_be_connected_from_object2 > > Hope it helps, > > Tsjerk > > On Sun, Mar 28, 2010 at 4:33 PM, Afonso Duarte <afo...@gm...> wrote: >> Dear All, >> >> I want to create molecule in Pymol by combining 3 different pdbs. >> Two of them are form the pdb data bank and one was created via pymol. >> I have the 3 of them open in pymol but now I am trying to figure out >> how to connect the termini of the polypeptides in pymol. >> >> I searched the wiki/manuals and the web but could not find a way how >> to do it. Is it possible to do it using pymol? if yes what are the >> commands to do so ? >> >> Thanks! >> >> Best >> >> Afonso >> >> ------------------------------------------------------------------------------ >> Download Intel® Parallel Studio Eval >> Try the new software tools for yourself. Speed compiling, find bugs >> proactively, and fine-tune applications for parallel performance. >> See why Intel Parallel Studio got high marks during beta. >> http://p.sf.net/sfu/intel-sw-dev >> _______________________________________________ >> PyMOL-users mailing list (PyM...@li...) >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> Archives: http://www.mail-archive.com/pym...@li... >> > > > > -- > Tsjerk A. Wassenaar, Ph.D. > > post-doctoral researcher > Molecular Dynamics Group > Groningen Institute for Biomolecular Research and Biotechnology > University of Groningen > The Netherlands >