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Commit 3e5d4ab

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Simplify python environment setup (#310)
* add pyproject.toml * simplify conda environment management * flake8 fix, remove conda-lock references * rebuild all pages without cache * fix codespell * fix for zarr v3 * use matrix for nocache workflow * fix some broken links
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‎.binder/environment.yml‎

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‎.binder/environment.yml‎

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name: default
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channels:
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- conda-forge
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- nodefaults
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dependencies:
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- jupyter-book >=1.0.3,<2
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- pre-commit >=4.1.0,<5
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- dask-labextension >=7.0.0,<8
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- jupyterlab >=4.3.5,<5
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- jupyter_bokeh >=4.0.5,<5
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- jupyterlab-myst >=2.4.2,<3
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- jupyter-resource-usage >=1.1.1,<2
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- cartopy >=0.24.0,<0.25
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- cf_xarray >=0.10.0,<0.11
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- dask >=202520,<2026
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- datashader >=0.17.0,<0.18
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- distributed >=202520,<2026
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- gcsfs >=202520,<2026
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- geoviews-core >=1.14.0,<2
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- gsw >=3.6.19,<4
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- hvplot >=0.11.2,<0.12
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- h5netcdf >=1.5.0,<2
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- ipykernel >=6.29.5,<7
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- matplotlib-base >=3.10.0,<4
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- netcdf4 >=1.7.2,<2
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- numpy >=2.1.3,<3
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- pint-xarray >=0.4,<0.5
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- pydap >=3.5.3,<4
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- python-graphviz >=0.20.3,<0.21
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- pooch >=1.8.2,<2
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- rioxarray >=0.18.2,<0.19
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- scipy >=1.15.2,<2
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- sphinx-codeautolink >=0.17.0,<0.18
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- sphinxcontrib-mermaid >=1.0.0,<2
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- sphinx-notfound-page >=1.0.4,<2
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- sphinxext-rediraffe >=0.2.7,<0.3
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- s3fs >=202520,<2026
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- xarray >=2025年1月2日,<2026
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- zarr >=3.0.3,<4
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- flox >=0.10.0,<0.11
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- numbagg >=0.9.0,<0.10
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- python >=3.10

‎.devcontainer/Dockerfile‎

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‎.devcontainer/devcontainer.json‎

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{
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"build": {
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"dockerfile": "./Dockerfile",
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"context": "../conda"
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},
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"image": "quay.io/pangeo/pangeo-notebook:latest",
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"postCreateCommand": {
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"vscode": "mkdir ${containerWorkspaceFolder}/.vscode && cp ${containerWorkspaceFolder}/.devcontainer/tasks.json ${containerWorkspaceFolder}/.vscode/tasks.json"
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},

‎.devcontainer/scipy2023/devcontainer.json‎

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{
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"build": {
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"dockerfile": "../Dockerfile",
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"context": "../../conda"
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},
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"image": "quay.io/pangeo/pangeo-notebook:2023年07月05日",
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"postCreateCommand": {
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"jupyterlab": "mkdir /home/jovyan/.jupyter && cp ${containerWorkspaceFolder}/.devcontainer/scipy2023/jupyter_lab_config.py /home/jovyan/.jupyter/jupyter_lab_config.py",
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"vscode": "mkdir ${containerWorkspaceFolder}/.vscode && cp ${containerWorkspaceFolder}/.devcontainer/scipy2023/tasks.json ${containerWorkspaceFolder}/.vscode/tasks.json"
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# Configuration file for lab.
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c = get_config() # noqa
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## The default URL to redirect to from `/`
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# Default: '/lab'
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c.LabApp.default_url = '/lab/tree/workshops/scipy2023/index.ipynb'
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## Set the Access-Control-Allow-Origin header
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#
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# Use '*' to allow any origin to access your server.
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#
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# Takes precedence over allow_origin_pat.
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# Default: ''
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c.ServerApp.allow_origin = '*'

‎.devcontainer/scipy2024/devcontainer.json‎

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{
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"build": {
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"dockerfile": "../Dockerfile",
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"context": "../../conda"
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},
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"image": "quay.io/pangeo/pangeo-notebook:2024年07月08日",
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"postCreateCommand": {
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"jupyterlab": "mkdir /home/jovyan/.jupyter && cp ${containerWorkspaceFolder}/.devcontainer/scipy2024/jupyter_lab_config.py /home/jovyan/.jupyter/jupyter_lab_config.py",
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"vscode": "mkdir ${containerWorkspaceFolder}/.vscode && cp ${containerWorkspaceFolder}/.devcontainer/scipy2024/tasks.json ${containerWorkspaceFolder}/.vscode/tasks.json"
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# Configuration file for lab.
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c = get_config() # noqa
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## The default URL to redirect to from `/`
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# Default: '/lab'
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c.LabApp.default_url = '/lab/tree/workshops/scipy2024/index.ipynb'
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## Set the Access-Control-Allow-Origin header
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#
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# Use '*' to allow any origin to access your server.
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#
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# Takes precedence over allow_origin_pat.
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# Default: ''
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c.ServerApp.allow_origin = '*'

‎.gitattributes‎

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# SCM syntax highlighting & preventing 3-way merges
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pixi.lock merge=binary linguist-language=YAML linguist-generated=true

‎.github/dependabot.yml‎

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# Regularly update Docker tags and Actions steps
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version: 2
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updates:
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- package-ecosystem: "docker"
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directory: "/.devcontainer"
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schedule:
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interval: "daily"
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- package-ecosystem: "github-actions"
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directory: "/.github"
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schedule:

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