Commit ea2243c

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Merge pull request #2990 from lucindasisk/patch-1

[ENH] Update mrtrix reconst.py EstimateFOD max_sh to be able to accept list

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+15

-7

lines changed

+15

-7

lines changed

Lines changed: 8 additions & 5 deletions

Original file line number	Diff line number	Diff line change
`@@ -6,7 +6,7 @@`
`6`	`6`
`7`	`7`	`import os.path as op`
`8`	`8`
`9`		`-from ..base import traits, TraitedSpec, File, Undefined`
	`9`	`+from ..base import traits, TraitedSpec, File, Undefined, InputMultiObject`
`10`	`10`	`from .base import MRTrix3BaseInputSpec, MRTrix3Base`
`11`	`11`
`12`	`12`
`@@ -115,10 +115,13 @@ class EstimateFODInputSpec(MRTrix3BaseInputSpec):`
`115`	`115`	`sep=',',`
`116`	`116`	`argstr='-shell %s',`
`117`	`117`	`desc='specify one or more dw gradient shells')`
`118`		`- max_sh = traits.Int(`
`119`		`- 8, usedefault=True,`
`120`		`- argstr='-lmax %d',`
`121`		`- desc='maximum harmonic degree of response function')`
	`118`	`+ max_sh = InputMultiObject(`
	`119`	`+ traits.Int,`
	`120`	`+ value=[8],`
	`121`	`+ usedefault=True,`
	`122`	`+ argstr='-lmax %s',`
	`123`	`+ sep=',',`
	`124`	`+ desc=('maximum harmonic degree of response function - single value for single-shell response, list for multi-shell response'))`
`122`	`125`	`in_dirs = File(`
`123`	`126`	`exists=True,`
`124`	`127`	`argstr='-directions %s',`

Lines changed: 7 additions & 2 deletions

Original file line number	Diff line number	Diff line change
`@@ -41,8 +41,12 @@ def test_EstimateFOD_inputs():`
`41`	`41`	`grad_file=dict(`
`42`	`42`	`argstr='-grad %s',`
`43`	`43`	`extensions=None,`
	`44`	`+ xor=['grad_fsl'],`
	`45`	`+ ),`
	`46`	`+ grad_fsl=dict(`
	`47`	`+ argstr='-fslgrad %s %s',`
	`48`	`+ xor=['grad_file'],`
`44`	`49`	`),`
`45`		`- grad_fsl=dict(argstr='-fslgrad %s %s', ),`
`46`	`50`	`in_bval=dict(extensions=None, ),`
`47`	`51`	`in_bvec=dict(`
`48`	`52`	`argstr='-fslgrad %s %s',`
`@@ -63,7 +67,8 @@ def test_EstimateFOD_inputs():`
`63`	`67`	`extensions=None,`
`64`	`68`	`),`
`65`	`69`	`max_sh=dict(`
`66`		`- argstr='-lmax %d',`
	`70`	`+ argstr='-lmax %s',`
	`71`	`+ sep=',',`
`67`	`72`	`usedefault=True,`
`68`	`73`	`),`
`69`	`74`	`nthreads=dict(`

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