A Tidy Tool for Phylogenetic Tree Data Manipulation [R package tidytree version 0.4.6]

Guangchuang Yu

tidytree: A Tidy Tool for Phylogenetic Tree Data Manipulation

Phylogenetic tree generally contains multiple components including node, edge, branch and associated data. 'tidytree' provides an approach to convert tree object to tidy data frame as well as provides tidy interfaces to manipulate tree data.

Version: 0.4.6

Depends: R (≥ 3.4.0)

Imports: ape, dplyr, lazyeval, magrittr, methods, rlang, tibble, tidyr, tidyselect, yulab.utils (≥ 0.0.4), pillar, cli

Suggests: knitr, rmarkdown, prettydoc, testthat, utils

Published: 2023年12月12日

DOI: 10.32614/CRAN.package.tidytree

Author: Guangchuang Yu ORCID iD [aut, cre, cph], Bradley Jones [ctb], Zebulun Arendsee [ctb]

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

BugReports: https://github.com/YuLab-SMU/tidytree/issues

License: Artistic-2.0

URL: https://www.amazon.com/Integration-Manipulation-Visualization-Phylogenetic-Computational-ebook/dp/B0B5NLZR1Z/

NeedsCompilation: no

Citation: tidytree citation info

Materials: NEWS

In views: Phylogenetics

CRAN checks: tidytree results

Documentation:

Reference manual: tidytree.html , tidytree.pdf

Vignettes: tidytree (source, R code)

Downloads:

Package source: tidytree_0.4.6.tar.gz

Windows binaries: r-devel: tidytree_0.4.6.zip, r-release: tidytree_0.4.6.zip, r-oldrel: tidytree_0.4.6.zip

macOS binaries: r-release (arm64): tidytree_0.4.6.tgz, r-oldrel (arm64): tidytree_0.4.6.tgz, r-release (x86_64): tidytree_0.4.6.tgz, r-oldrel (x86_64): tidytree_0.4.6.tgz

Old sources: tidytree archive

Reverse dependencies:

Reverse imports: avotrex, crumblr, FossilSim, ggtree, ggtreeDendro, ggtreeExtra, iNEXT.3D, iNEXT.beta3D, miaViz, MicrobiotaProcess, oppr, RevGadgets, sitePath, treeio

Reverse suggests: compcodeR, DAISIE, delimtools, nosoi, pctax, Platypus

Linking:

Please use the canonical form https://CRAN.R-project.org/package=tidytree to link to this page.