CRAN: Package seqmagick

seqmagick: Sequence Manipulation Utilities

Supports reading and writing sequences for different formats (currently interleaved and sequential formats for 'FASTA' and 'PHYLIP'), file conversion, and manipulation (e.g. filter sequences that contain specify pattern, export consensus sequence from an alignment).

Version: 0.1.7

Depends: R (≥ 3.6.0)

Imports: Biostrings, magrittr, stats, utils, yulab.utils (> 0.1.1)

Suggests: downloader, knitr, rmarkdown, GenomicAlignments, GenomicRanges, IRanges, muscle, Rsamtools, prettydoc

Published: 2024年01月09日

DOI: 10.32614/CRAN.package.seqmagick

Author: Guangchuang Yu ORCID iD [aut, cre]

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

BugReports: https://github.com/YuLab-SMU/seqmagick/issues

License: Artistic-2.0

URL: https://github.com/YuLab-SMU/seqmagick

NeedsCompilation: no

Materials: NEWS

CRAN checks: seqmagick results

Documentation:

Reference manual: seqmagick.html , seqmagick.pdf

Vignettes: seqmagick introduction (source, R code)

Downloads:

Package source: seqmagick_0.1.7.tar.gz

Windows binaries: r-devel: seqmagick_0.1.7.zip, r-release: seqmagick_0.1.7.zip, r-oldrel: seqmagick_0.1.7.zip

macOS binaries: r-release (arm64): seqmagick_0.1.7.tgz, r-oldrel (arm64): seqmagick_0.1.7.tgz, r-release (x86_64): seqmagick_0.1.7.tgz, r-oldrel (x86_64): seqmagick_0.1.7.tgz

Old sources: seqmagick archive

Reverse dependencies:

Reverse imports: ggmsa

Reverse suggests: MicrobiotaProcess

Linking:

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