Infer Ploidy of Single Cells [R package scPloidy version 0.6.2]

Fumihiko Takeuchi

scPloidy: Infer Ploidy of Single Cells

Compute ploidy of single cells (or nuclei) based on single-cell (or single-nucleus) ATAC-seq (Assay for Transposase-Accessible Chromatin using sequencing) data <https://github.com/fumi-github/scPloidy>.

Version: 0.6.2

Depends: R (≥ 3.5.0)

Imports: dplyr, GenomicRanges, magrittr, MASS, matrixStats, mixtools, nimble, rlang, Rsamtools, tibble, tidyr, utils

Suggests: gplots, IRanges, knitr, readr, rmarkdown, testthat (≥ 3.0.0)

Published: 2024年04月28日

DOI: 10.32614/CRAN.package.scPloidy

Author: Fumihiko Takeuchi ORCID iD [aut, cre]

Maintainer: Fumihiko Takeuchi <fumihiko at takeuchi.name>

BugReports: https://github.com/fumi-github/scPloidy/issues

License: MIT + file LICENSE

NeedsCompilation: no

Materials: README

CRAN checks: scPloidy results

Documentation:

Reference manual: scPloidy.html , scPloidy.pdf

Vignettes: CNV (source, R code)
intro (source, R code)

Downloads:

Package source: scPloidy_0.6.2.tar.gz

Windows binaries: r-devel: scPloidy_0.6.2.zip, r-release: scPloidy_0.6.2.zip, r-oldrel: scPloidy_0.6.2.zip

macOS binaries: r-release (arm64): scPloidy_0.6.2.tgz, r-oldrel (arm64): scPloidy_0.6.2.tgz, r-release (x86_64): scPloidy_0.6.2.tgz, r-oldrel (x86_64): scPloidy_0.6.2.tgz

Old sources: scPloidy archive

Linking:

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