scCustomize: Custom Visualizations & Functions for Streamlined Analyses of
Single Cell Sequencing
Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using 'R'. 'scCustomize' aims to provide 1) Customized visualizations for aid in ease of use and to create more aesthetic and functional visuals. 2) Improve speed/reproducibility of common tasks/pieces of code in scRNA-seq analysis with a single or group of functions. For citation please use: Marsh SE (2021) "Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing" <doi:10.5281/zenodo.5706430> RRID:SCR_024675.
Version:
3.2.2
Depends:
R (≥ 4.0.0),
Seurat (≥ 4.3.0.1)
Imports:
circlize,
cli (≥ 3.2.0),
cowplot,
data.table,
dplyr,
forcats,
ggbeeswarm,
ggplot2,
ggprism,
ggrastr,
ggrepel,
glue, grDevices, grid,
janitor,
lifecycle,
magrittr,
Matrix (≥
1.5.0), methods,
paletteer,
patchwork,
pbapply,
purrr,
rlang (≥ 1.1.3),
scales,
scattermore (≥ 1.2),
SeuratObject (≥
5.0.0), stats,
stringi,
stringr,
tibble,
tidyr
Suggests:
BiocFileCache,
ComplexHeatmap,
dittoSeq,
DropletUtils,
ggpubr,
hdf5r,
knitr,
Nebulosa,
remotes,
reticulate,
rliger,
rmarkdown,
scuttle,
tidyselect,
qs,
viridis
Published:
2025年11月12日
Author:
Samuel Marsh
ORCID iD
[aut, cre],
Ming Tang [ctb],
Velina Kozareva [ctb],
Lucas Graybuck [ctb],
Zoe Clarke
ORCID iD [ctb]
Maintainer:
Samuel Marsh <sccustomize at gmail.com>
NeedsCompilation:
no
Documentation:
Downloads:
Reverse dependencies:
Linking:
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https://CRAN.R-project.org/package=scCustomize
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