Random-Effect Multiple QTL Mapping in Autopolyploids [R package qtlpoly version 0.2.4]

Guilherme da Silva Pereira

qtlpoly: Random-Effect Multiple QTL Mapping in Autopolyploids

Performs random-effect multiple interval mapping (REMIM) in full-sib families of autopolyploid species based on restricted maximum likelihood (REML) estimation and score statistics, as described in Pereira et al. (2020) <doi:10.1534/genetics.120.303080>.

Version: 0.2.4

Depends: R (≥ 4.0)

Imports: ggplot2 (≥ 3.1), abind (≥ 1.4), MASS (≥ 7.3), gtools (≥ 3.9.2), CompQuadForm, Matrix, RLRsim, mvtnorm, nlme, quadprog, parallel, doParallel, foreach, stats, methods, mappoly, Rcpp (≥ 0.12.19)

LinkingTo: Rcpp, RcppArmadillo, RcppProgress

Suggests: rmarkdown, devtools, knitr

Published: 2024年03月25日

DOI: 10.32614/CRAN.package.qtlpoly

Author: Guilherme da Silva Pereira ORCID iD [aut], Marcelo Mollinari ORCID iD [ctb], Gabriel de Siqueira Gesteira ORCID iD [ctb, cre], Zhao-Bang Zeng ORCID iD [ctb], Long Qu [ctb] (R code for variance component tests using score statistics in R/varComp.R), Giovanny Covarrubias-Pazaran [ctb] (C code for fitting mixed models with REML estimation in src/MNR.cpp)

Maintainer: Gabriel de Siqueira Gesteira <gdesiqu at ncsu.edu>

BugReports: https://github.com/gabrielgesteira/QTLpoly/issues

License: GPL-3

URL: https://gabrielgesteira.github.io/QTLpoly/

NeedsCompilation: yes

Citation: qtlpoly citation info

Materials: README

In views: Agriculture

CRAN checks: qtlpoly results

Documentation:

Reference manual: qtlpoly.html , qtlpoly.pdf

Downloads:

Package source: qtlpoly_0.2.4.tar.gz

Windows binaries: r-devel: qtlpoly_0.2.4.zip, r-release: qtlpoly_0.2.4.zip, r-oldrel: qtlpoly_0.2.4.zip

macOS binaries: r-release (arm64): qtlpoly_0.2.4.tgz, r-oldrel (arm64): qtlpoly_0.2.4.tgz, r-release (x86_64): qtlpoly_0.2.4.tgz, r-oldrel (x86_64): qtlpoly_0.2.4.tgz

Old sources: qtlpoly archive

Linking:

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