Visually Assessing the Specificity and Informativeness of Primer Pairs [R package primerTree version 1.1.0]

primerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs

Identifies potential target sequences for a given set of primers and generates phylogenetic trees annotated with the taxonomies of the predicted amplification products.

Version: 1.1.0

Depends: directlabels, gridExtra, R (≥ 4.1.0)

Imports: ape, foreach, ggplot2, grid, httr, httr2, lubridate, plyr, reshape2, scales, stringr, XML

Published: 2025年10月03日

DOI: 10.32614/CRAN.package.primerTree

Author: Jim Hester [aut], Matt Cannon [aut, cre]

Maintainer: Matt Cannon <matthewvc1 at gmail.com>

License: GPL-2

NeedsCompilation: yes

CRAN checks: primerTree results

Documentation:

Reference manual: primerTree.html , primerTree.pdf

Downloads:

Package source: primerTree_1.1.0.tar.gz

Windows binaries: r-devel: primerTree_1.1.0.zip, r-release: primerTree_1.1.0.zip, r-oldrel: primerTree_1.1.0.zip

macOS binaries: r-release (arm64): primerTree_1.1.0.tgz, r-oldrel (arm64): primerTree_1.1.0.tgz, r-release (x86_64): primerTree_1.1.0.tgz, r-oldrel (x86_64): primerTree_1.1.0.tgz

Old sources: primerTree archive

Linking:

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