netgsa: Network-Based Gene Set Analysis
Carry out network-based gene set analysis by incorporating external information about interactions among genes, as well as novel interactions learned from data. Implements methods described in Shojaie A, Michailidis G (2010) <doi:10.1093/biomet/asq038>, Shojaie A, Michailidis G (2009) <doi:10.1089/cmb.2008.0081>, and Ma J, Shojaie A, Michailidis G (2016) <doi:10.1093/bioinformatics/btw410>.
Version:
4.0.6
Depends:
R (≥ 3.5.0)
Imports:
AnnotationDbi,
corpcor,
data.table,
dplyr,
genefilter,
graph,
graphite,
glmnet,
glassoFast,
httr,
igraph,
magrittr,
Matrix,
msigdbr,
org.Hs.eg.db,
quadprog,
RCy3,
reshape2,
rlang,
Rcpp (≥ 1.0.2)
Published:
2025年07月30日
Author:
Michael Hellstern [aut, cre],
Ali Shojaie [aut],
Jing Ma [aut],
Kun Yue [aut]
Maintainer:
Michael Hellstern <mikeh1 at uw.edu>
NeedsCompilation:
yes
Documentation:
Downloads:
Reverse dependencies:
Linking:
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