A Statistical Framework for Comparing Sets of Trees [R package mixtree version 0.0.1]

Cyril Geismar

mixtree: A Statistical Framework for Comparing Sets of Trees

Statistical framework for comparing sets of trees using hypothesis testing methods. Designed for transmission trees, phylogenetic trees, and directed acyclic graphs (DAGs), the package implements chi-squared tests to compare edge frequencies between sets and PERMANOVA to analyse topological dissimilarities with customisable distance metrics, following Anderson (2001) <doi:10.1111/j.1442-9993.2001.01070.pp.x>.

Version: 0.0.1

Imports: igraph, treespace, vegan

Suggests: knitr, rmarkdown

Published: 2025年03月05日

DOI: 10.32614/CRAN.package.mixtree

Author: Cyril Geismar ORCID iD [aut, cre, cph]

Maintainer: Cyril Geismar <c.geismar21 at imperial.ac.uk>

License: MIT + file LICENSE

URL: https://cygei.github.io/mixtree/

NeedsCompilation: no

Materials: README

CRAN checks: mixtree results

Documentation:

Reference manual: mixtree.html , mixtree.pdf

Vignettes: mixtree (source, R code)

Downloads:

Package source: mixtree_0.0.1.tar.gz

Windows binaries: r-devel: mixtree_0.0.1.zip, r-release: mixtree_0.0.1.zip, r-oldrel: mixtree_0.0.1.zip

macOS binaries: r-release (arm64): mixtree_0.0.1.tgz, r-oldrel (arm64): mixtree_0.0.1.tgz, r-release (x86_64): mixtree_0.0.1.tgz, r-oldrel (x86_64): mixtree_0.0.1.tgz

Reverse dependencies:

Reverse suggests: o2ools

Linking:

Please use the canonical form https://CRAN.R-project.org/package=mixtree to link to this page.