CRAN: Package marked

marked: Mark-Recapture Analysis for Survival and Abundance Estimation

Functions for fitting various models to capture-recapture data including mixed-effects Cormack-Jolly-Seber(CJS) and multistate models and the multi-variate state model structure for survival estimation and POPAN structured Jolly-Seber models for abundance estimation. There are also Hidden Markov model (HMM) implementations of CJS and multistate models with and without state uncertainty and a simulation capability for HMM models.

Version: 1.2.8

Depends: R (≥ 3.5.0), lme4, methods, parallel

Imports: graphics, stats, utils, R2admb, truncnorm, coda, Matrix, numDeriv, expm, Rcpp (≥ 0.9.13), TMB, optimx (≥ 2013年8月6日), data.table, knitr, kableExtra, bookdown

LinkingTo: Rcpp

Suggests: ggplot2

Published: 2023年10月19日

DOI: 10.32614/CRAN.package.marked

Author: Jeff Laake, Devin Johnson, Paul Conn, example for simHMM from Jay Rotella

Maintainer: Jeff Laake <jefflaake at gmail.com>

License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]

NeedsCompilation: yes

SystemRequirements: ADMB version 11 <http://admb-project.org/> for use.admb=TRUE; see readme.txt

Citation: marked citation info

Materials: NEWS

In views: Environmetrics

CRAN checks: marked results

Documentation:

Reference manual: marked.html , marked.pdf

Vignettes: "marked Package Vignette" (source, R code)

Downloads:

Package source: marked_1.2.8.tar.gz

Windows binaries: r-devel: marked_1.2.8.zip, r-release: marked_1.2.8.zip, r-oldrel: marked_1.2.8.zip

macOS binaries: r-release (arm64): marked_1.2.8.tgz, r-oldrel (arm64): marked_1.2.8.tgz, r-release (x86_64): marked_1.2.8.tgz, r-oldrel (x86_64): marked_1.2.8.tgz

Old sources: marked archive

Reverse dependencies:

Reverse imports: RWildbook

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