Hidden Markov Models of Character Evolution [R package corHMM version 2.8]

corHMM: Hidden Markov Models of Character Evolution

Fits hidden Markov models of discrete character evolution which allow different transition rate classes on different portions of a phylogeny. Beaulieu et al (2013) <doi:10.1093/sysbio/syt034>.

Version: 2.8

Depends: ape, nloptr, GenSA

Imports: expm, numDeriv, corpcor, MASS, nnet, phangorn, parallel, viridis, Rmpfr, igraph, phytools

Suggests: testthat, knitr, rmarkdown

Published: 2022年06月13日

DOI: 10.32614/CRAN.package.corHMM

Author: Jeremy Beaulieu [aut, cre], Brian O'Meara [aut], Jeffrey Oliver [aut], James Boyko [aut]

Maintainer: Jeremy Beaulieu <jmbeauli at uark.edu>

License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]

NeedsCompilation: no

In views: Phylogenetics

CRAN checks: corHMM results

Documentation:

Reference manual: corHMM.html , corHMM.pdf

Vignettes: Generalized corHMM (source, R code)

Downloads:

Package source: corHMM_2.8.tar.gz

Windows binaries: r-devel: corHMM_2.8.zip, r-release: corHMM_2.8.zip, r-oldrel: corHMM_2.8.zip

macOS binaries: r-release (arm64): corHMM_2.8.tgz, r-oldrel (arm64): corHMM_2.8.tgz, r-release (x86_64): corHMM_2.8.tgz, r-oldrel (x86_64): corHMM_2.8.tgz

Old sources: corHMM archive

Reverse dependencies:

Reverse imports: hisse

Reverse suggests: DAISIEprep

Linking:

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