CRAN: Package coloc

coloc: Colocalisation Tests of Two Genetic Traits

Performs the colocalisation tests described in Giambartolomei et al (2013) <doi:10.1371/journal.pgen.1004383>, Wallace (2020) <doi:10.1371/journal.pgen.1008720>, Wallace (2021) <doi:10.1371/journal.pgen.1009440>.

Version: 5.2.3

Depends: R (≥ 3.5)

Imports: data.table, ggplot2, methods, viridis, stats, grDevices, susieR (≥ 0.12.06), utils

Suggests: knitr, testthat, mvtnorm, magrittr, rmarkdown

Published: 2023年10月03日

DOI: 10.32614/CRAN.package.coloc

Author: Chris Wallace [aut, cre], Claudia Giambartolomei [aut], Vincent Plagnol [ctb]

Maintainer: Chris Wallace <cew54 at cam.ac.uk>

BugReports: https://github.com/chr1swallace/coloc/issues

License: GPL-2 | GPL-3 [expanded from: GPL]

URL: https://github.com/chr1swallace/coloc

NeedsCompilation: no

Citation: coloc citation info

Materials: README, NEWS

CRAN checks: coloc results

Documentation:

Reference manual: coloc.html , coloc.pdf

Vignettes: Coloc: a package for colocalisation analyses (source)
Coloc: data structures (source, R code)
Coloc: under a single causal variant assumption (source, R code)
Coloc: sensitivity to prior values (source, R code)
DEPRECATED Coloc: relaxing the single causal variant assumption (source, R code)
Coloc: using SuSiE to relax the single causal variant assumption (source, R code)

Downloads:

Package source: coloc_5.2.3.tar.gz

Windows binaries: r-devel: coloc_5.2.3.zip, r-release: coloc_5.2.3.zip, r-oldrel: coloc_5.2.3.zip

macOS binaries: r-release (arm64): coloc_5.2.3.tgz, r-oldrel (arm64): coloc_5.2.3.tgz, r-release (x86_64): coloc_5.2.3.tgz, r-oldrel (x86_64): coloc_5.2.3.tgz

Old sources: coloc archive

Reverse dependencies:

Reverse imports: colocPropTest, cophescan

Linking:

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