bulkAnalyseR: Interactive Shiny App for Bulk Sequencing Data
Given an expression matrix from a bulk sequencing experiment,
pre-processes it and creates a shiny app for interactive data
analysis and visualisation. The app contains quality checks,
differential expression analysis, volcano and cross plots,
enrichment analysis and gene regulatory network inference,
and can be customised to contain more panels by the user.
Version:
1.1.0
Depends:
R (≥ 4.0)
Imports:
ggplot2,
shiny,
gprofiler2,
edgeR,
DESeq2, stats,
ggrepel, utils,
RColorBrewer,
ComplexHeatmap,
circlize, grid,
shinyWidgets,
shinyjqui,
dplyr,
magrittr,
ggforce,
rlang,
glue,
preprocessCore,
matrixStats,
noisyr,
tibble,
ggnewscale,
ggrastr,
GENIE3,
visNetwork,
DT,
scales,
shinyjs,
tidyr,
shinyLP,
UpSetR,
stringr,
ggVennDiagram
Published:
2022年12月15日
Author:
Ilias Moutsopoulos [aut, cre],
Eleanor Williams [aut, ctb],
Irina Mohorianu [aut, ctb]
Maintainer:
Ilias Moutsopoulos <im383 at cam.ac.uk>
NeedsCompilation:
no
Documentation:
Downloads:
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