UCSCXenaShiny: Interactive Analysis of UCSC Xena Data
Provides functions and a Shiny application for downloading,
analyzing and visualizing datasets from UCSC Xena
(<http://xena.ucsc.edu/>), which is a collection of UCSC-hosted public
databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others.
Version:
2.2.0
Depends:
R (≥ 3.5)
Imports:
digest,
dplyr (≥ 0.8.3),
ezcox,
forcats,
ggplot2 (≥ 3.2.0),
ggpubr (≥ 0.2),
httr,
magrittr (≥ 1.5),
ppcor,
psych,
purrr,
rlang,
shiny (≥ 1.3.2), stats,
stringr,
tibble (≥ 2.1.3),
tidyr,
UCSCXenaTools, utils
Suggests:
covr (≥ 3.2.1),
cowplot,
DT (≥ 0.5),
funkyheatmap,
furrr,
future,
ggrepel,
ggstatsplot,
glue,
knitr,
pacman,
plotly,
plyr,
RColorBrewer (≥ 1.1.2),
readr,
rmarkdown,
Rtsne,
scales,
survival,
survminer,
testthat (≥ 2.0.1),
umap
Published:
2025年08月01日
Author:
Shixiang Wang
ORCID iD
[aut, cre],
Shensuo Li [aut],
Yi Xiong
ORCID iD [aut],
Longfei Zhao
ORCID iD
[aut],
Kai Gu
ORCID iD [aut],
Yin Li [aut],
Fei Zhao [aut]
Maintainer:
Shixiang Wang <w_shixiang at 163.com>
NeedsCompilation:
no
Documentation:
Downloads:
Reverse dependencies:
Linking:
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