CRAN: Package SkeletalVis

SkeletalVis: Exploration and Visualisation of Skeletal Transcriptomics Data

Allows search and visualisation of a collection of uniformly processed skeletal transcriptomic datasets. Includes methods to identify datasets where genes of interest are differentially expressed and find datasets with a similar gene expression pattern to a query dataset Soul J, Hardingham TE, Boot-Handford RP, Schwartz JM (2019) <doi:10.1093/bioinformatics/bty947>.

Version: 0.1.1

Depends: R (≥ 4.0)

Imports: arrow, cowplot, dplyr, DT, ggplot2, ggrepel, httr, igraph, miniUI, pbapply, plotly, rlang, shiny, stats, tidyr, utils, visNetwork

Suggests: mockery, rmarkdown, knitr, testthat (≥ 3.0.0), withr

Published: 2025年05月06日

DOI: 10.32614/CRAN.package.SkeletalVis

Author: Jamie Soul [aut, cre, cph]

Maintainer: Jamie Soul <jamie.soul at liverpool.ac.uk>

BugReports: https://github.com/soulj/SkeletalVis/issues

License: MIT + file LICENSE

URL: https://github.com/soulj/SkeletalVis

NeedsCompilation: no

Materials: README, NEWS

CRAN checks: SkeletalVis results

Documentation:

Reference manual: SkeletalVis.html , SkeletalVis.pdf

Vignettes: SkeletalVis (source, R code)

Downloads:

Package source: SkeletalVis_0.1.1.tar.gz

Windows binaries: r-devel: SkeletalVis_0.1.1.zip, r-release: SkeletalVis_0.1.1.zip, r-oldrel: SkeletalVis_0.1.1.zip

macOS binaries: r-release (arm64): SkeletalVis_0.1.1.tgz, r-oldrel (arm64): SkeletalVis_0.1.1.tgz, r-release (x86_64): SkeletalVis_0.1.1.tgz, r-oldrel (x86_64): SkeletalVis_0.1.1.tgz

Linking:

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