MetaComp: EDGE Taxonomy Assignments Visualization

Implements routines for metagenome sample taxonomy assignments collection, aggregation, and visualization. Accepts the EDGE-formatted output from GOTTCHA/GOTTCHA2, BWA, Kraken, MetaPhlAn, DIAMOND, and Pangia. Produces SVG and PDF heatmap-like plots comparing taxa abundances across projects.

Version: 1.1.2
Depends: R (≥ 3.1.0)
Imports: reshape2, plyr, dplyr, data.table, ggplot2, Cairo
Suggests: testthat
Published: 2018年06月18日
DOI: 10.32614/CRAN.package.MetaComp
Author: Pavel Senin [aut, cre]
Maintainer: Pavel Senin <senin at hawaii.edu>
BugReports: https://github.com/seninp-bioinfo/MetaComp/issues
License: GPL-2
URL: https://github.com/seninp-bioinfo/MetaComp
NeedsCompilation: no
Materials: README
CRAN checks: MetaComp results [issues need fixing before 2025年12月05日]

Documentation:

Reference manual: MetaComp.html , MetaComp.pdf

Downloads:

Package source: MetaComp_1.1.2.tar.gz
Windows binaries: r-devel: MetaComp_1.1.2.zip, r-release: MetaComp_1.1.2.zip, r-oldrel: MetaComp_1.1.2.zip
macOS binaries: r-release (arm64): MetaComp_1.1.2.tgz, r-oldrel (arm64): MetaComp_1.1.2.tgz, r-release (x86_64): MetaComp_1.1.2.tgz, r-oldrel (x86_64): MetaComp_1.1.2.tgz
Old sources: MetaComp archive

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