Haplotype Trend Regression with eXtra Flexibility (HTRX) [R package HTRX version 1.2.4]

HTRX: Haplotype Trend Regression with eXtra Flexibility (HTRX)

Detection of haplotype patterns that include single nucleotide polymorphisms (SNPs) and non-contiguous haplotypes that are associated with a phenotype. Methods for implementing HTRX are described in Yang Y, Lawson DJ (2023) <doi:10.1093/bioadv/vbad038> and Barrie W, Yang Y, Irving-Pease E.K, et al (2024) <doi:10.1038/s41586-023-06618-z>.

Version: 1.2.4

Depends: R (≥ 4.0.0)

Imports: fastglm, caret, parallel, methods, stats, glmnet, tune, recipes

Suggests: knitr, rmarkdown

Published: 2024年02月09日

DOI: 10.32614/CRAN.package.HTRX

Author: Yaoling Yang ORCID iD [aut, cre], Daniel Lawson ORCID iD [aut]

Maintainer: Yaoling Yang <yaoling.yang at bristol.ac.uk>

License: GPL-3

NeedsCompilation: no

Materials: README

CRAN checks: HTRX results

Documentation:

Reference manual: HTRX.html , HTRX.pdf

Vignettes: HTRX_vignette (source, R code)

Downloads:

Package source: HTRX_1.2.4.tar.gz

Windows binaries: r-devel: HTRX_1.2.4.zip, r-release: HTRX_1.2.4.zip, r-oldrel: HTRX_1.2.4.zip

macOS binaries: r-release (arm64): HTRX_1.2.4.tgz, r-oldrel (arm64): HTRX_1.2.4.tgz, r-release (x86_64): HTRX_1.2.4.tgz, r-oldrel (x86_64): HTRX_1.2.4.tgz

Old sources: HTRX archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=HTRX to link to this page.