CRAN: Package CDMConnector

CDMConnector: Connect to an OMOP Common Data Model

Provides tools for working with observational health data in the Observational Medical Outcomes Partnership (OMOP) Common Data Model format with a pipe friendly syntax. Common data model database table references are stored in a single compound object along with metadata.

Version: 2.2.0

Depends: R (≥ 4.1.0)

Imports: dplyr, dbplyr (≥ 2.5.0), DBI (≥ 0.3.0), checkmate, cli, purrr, rlang, tidyselect, glue, methods, withr, lifecycle, stringr, stringi, generics, tidyr, jsonlite, readr, omopgenerics (≥ 1.2.0)

Suggests: SqlRender, CirceR, rJava, covr, knitr, rmarkdown, duckdb, RSQLite, RPostgres, DatabaseConnector, odbc, ggplot2, bigrquery, lubridate, clock, tibble, testthat (≥ 3.0.0), pool, snakecase, digest

Enhances: arrow

Published: 2025年09月16日

DOI: 10.32614/CRAN.package.CDMConnector

Author: Adam Black ORCID iD [aut, cre], Artem Gorbachev [aut], Edward Burn [aut], Marti Catala Sabate [aut], Ioanna Nika [aut]

Maintainer: Adam Black <black at ohdsi.org>

BugReports: https://github.com/darwin-eu/CDMConnector/issues

License: Apache License (≥ 2)

URL: https://darwin-eu.github.io/CDMConnector/, https://github.com/darwin-eu/CDMConnector

NeedsCompilation: no

Materials: README, NEWS

CRAN checks: CDMConnector results [issues need fixing before 2025年12月15日]

Documentation:

Reference manual: CDMConnector.html , CDMConnector.pdf

Vignettes: Getting Started (source, R code)
Working with cohorts (source, R code)
CDMConnector and dbplyr (source, R code)
DBI connection examples (source, R code)
Using CDM attributes (source, R code)

Downloads:

Package source: CDMConnector_2.2.0.tar.gz

Windows binaries: r-devel: CDMConnector_2.2.0.zip, r-release: CDMConnector_2.2.0.zip, r-oldrel: CDMConnector_2.2.0.zip

macOS binaries: r-release (arm64): CDMConnector_2.2.0.tgz, r-oldrel (arm64): CDMConnector_2.2.0.tgz, r-release (x86_64): CDMConnector_2.2.0.tgz, r-oldrel (x86_64): CDMConnector_2.2.0.tgz

Old sources: CDMConnector archive

Reverse dependencies:

Reverse imports: CohortCharacteristics, CohortSurvival, CohortSymmetry, DrugExposureDiagnostics, DrugUtilisation, IncidencePrevalence, OmopSketch, TestGenerator

Reverse suggests: CodelistGenerator, CohortConstructor, MeasurementDiagnostics, omock, OmopConstructor, omopgenerics, OmopOnSpark, OmopViewer, PatientProfiles, PhenotypeR, TreatmentPatterns

Linking:

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