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BP4RNAseq
This is the released version of BP4RNAseq; for the devel version, see BP4RNAseq.
A babysitter's package for reproducible RNA-seq analysis
Bioconductor version: Release (3.22)
An automated pipe for reproducible RNA-seq analysis with the minimal efforts from researchers. The package can process bulk RNA-seq data and single-cell RNA-seq data. You can only provide the taxa name and the accession id of RNA-seq data deposited in the National Center for Biotechnology Information (NCBI). After a cup of tea or longer, you will get formated gene expression data as gene count and transcript count based on both alignment-based and alignment-free workflows.
Author: Shanwen Sun [cre, aut], Lei Xu [aut], Quan Zou [aut]
Maintainer: Shanwen Sun <sunshanwen at gmail.com>
citation("BP4RNAseq")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BP4RNAseq")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BP4RNAseq")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.