STexampleData

This is the released version of STexampleData; for the devel version, see STexampleData.

Collection of spatial transcriptomics datasets in SpatialExperiment Bioconductor format

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DOI: 10.18129/B9.bioc.STexampleData

Bioconductor version: Release (3.22)

Collection of spatial transcriptomics datasets stored in SpatialExperiment Bioconductor format, for use in examples, demonstrations, and tutorials. The datasets are from several different platforms and have been sourced from various publicly available sources. Several datasets include images and/or reference annotation labels.

Author: Lukas M. Weber [aut, cre] ORCID iD ORCID: 0000-0002-3282-1730 , Yixing E. Dong [aut] ORCID iD ORCID: 0009-0003-5115-5686

Maintainer: Lukas M. Weber <lmweb012 at gmail.com>

Citation (from within R, enter citation("STexampleData")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("STexampleData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("STexampleData")

STexampleData overview HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, ReproducibleResearch, SingleCellData, SpatialData

Version 1.18.0

License MIT + file LICENSE

Depends ExperimentHub, SingleCellExperiment, SpatialExperiment

Imports utils

System Requirements

URL https://github.com/lmweber/STexampleData

Bug Reports https://github.com/lmweber/STexampleData/issues

Suggests BiocStyle, knitr, rmarkdown, BumpyMatrix, HDF5Array

Linking To

Enhances

Depends On Me

Imports Me OSTA

Suggests Me BulkSignalR, escheR, ggsc, ggspavis, nnSVG, poem, smoothclust, spatialSimGP, spoon, SpotSweeper, SVP, tpSVG

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package STexampleData_1.18.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/STexampleData

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/STexampleData

Package Short Url https://bioconductor.org/packages/STexampleData/

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