tRNAdbImport

This is the released version of tRNAdbImport; for the devel version, see tRNAdbImport.

Importing from tRNAdb and mitotRNAdb as GRanges objects

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DOI: 10.18129/B9.bioc.tRNAdbImport

Bioconductor version: Release (3.22)

tRNAdbImport imports the entries of the tRNAdb and mtRNAdb (http://trna.bioinf.uni-leipzig.de) as GRanges object.

Author: Felix G.M. Ernst [aut, cre] ORCID iD ORCID: 0000-0001-5064-0928

Maintainer: Felix G.M. Ernst <felix.gm.ernst at outlook.com>

Citation (from within R, enter citation("tRNAdbImport")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("tRNAdbImport")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tRNAdbImport")

tRNAdbImport HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataImport, Software, Visualization

Version 1.28.0

In Bioconductor since BioC 3.8 (R-3.5) (7 years)

License GPL-3 + file LICENSE

Depends R (>= 3.6), GenomicRanges, Modstrings, Structstrings, tRNA

Imports Biostrings, stringr, httr2, xml2, S4Vectors, methods, IRanges, utils

System Requirements

URL

Bug Reports https://github.com/FelixErnst/tRNAdbImport/issues

Suggests BiocGenerics, knitr, rmarkdown, testthat, httptest, BiocStyle, rtracklayer

Linking To

Enhances

Depends On Me

Imports Me EpiTxDb

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tRNAdbImport_1.28.0.tar.gz

Windows Binary (x86_64) tRNAdbImport_1.27.0.zip

macOS Binary (x86_64) tRNAdbImport_1.28.0.tgz

macOS Binary (arm64) tRNAdbImport_1.28.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/tRNAdbImport

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tRNAdbImport

Bioc Package Browser https://code.bioconductor.org/browse/tRNAdbImport/

Package Short Url https://bioconductor.org/packages/tRNAdbImport/

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