- Home
- Bioconductor 3.22
- Software Packages
- iSEEpathways
iSEEpathways
This is the released version of iSEEpathways; for the devel version, see iSEEpathways.
iSEE extension for panels related to pathway analysis
Bioconductor version: Release (3.22)
This package contains diverse functionality to extend the usage of the iSEE package, including additional classes for the panels or modes facilitating the analysis of pathway analysis results. This package does not perform pathway analysis. Instead, it provides methods to embed precomputed pathway analysis results in a SummarizedExperiment object, in a manner that is compatible with interactive visualisation in iSEE applications.
Author: Kevin Rue-Albrecht [aut, cre] ORCID iD ORCID: 0000-0003-3899-3872 , Thomas Sandmann [ctb] ORCID iD ORCID: 0000-0002-6601-8890 , Charlotte Soneson [aut] ORCID iD ORCID: 0000-0003-3833-2169 , Federico Marini [ctb] ORCID iD ORCID: 0000-0003-3252-7758 , Denali Therapeutics [fnd]
Maintainer: Kevin Rue-Albrecht <kevinrue67 at gmail.com>
citation("iSEEpathways")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("iSEEpathways")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("iSEEpathways")
Details
See More
Package Archives
Follow Installation instructions to use this package in your R session.