enrichplot

This is the released version of enrichplot; for the devel version, see enrichplot.

Visualization of Functional Enrichment Result

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DOI: 10.18129/B9.bioc.enrichplot

Bioconductor version: Release (3.22)

The 'enrichplot' package implements several visualization methods for interpreting functional enrichment results obtained from ORA or GSEA analysis. It is mainly designed to work with the 'clusterProfiler' package suite. All the visualization methods are developed based on 'ggplot2' graphics.

Author: Guangchuang Yu [aut, cre] ORCID iD ORCID: 0000-0002-6485-8781 , Chun-Hui Gao [ctb] ORCID iD ORCID: 0000-0002-1445-7939

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("enrichplot")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("enrichplot")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("enrichplot")

enrichplot HTML

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Annotation, GO, GeneSetEnrichment, KEGG, Pathways, Software, Visualization

Version 1.30.2

In Bioconductor since BioC 3.7 (R-3.5) (7.5 years)

License Artistic-2.0

Depends R (>= 4.1.0)

Imports aplot (>= 0.2.1), DOSE(>= 3.31.2), ggfun (>= 0.1.7), ggnewscale, ggplot2 (>= 3.5.0), ggrepel (>= 0.9.0), ggtangle (>= 0.0.5), graphics, grid, igraph, methods, plyr, purrr, RColorBrewer, reshape2, rlang, stats, utils, scatterpie, GOSemSim(>= 2.31.2), magrittr, ggtree, yulab.utils (>= 0.1.6)

System Requirements

URL https://yulab-smu.top/contribution-knowledge-mining/

Bug Reports https://github.com/GuangchuangYu/enrichplot/issues

Suggests clusterProfiler, dplyr, europepmc, ggarchery, ggupset, glue, knitr, rmarkdown, org.Hs.eg.db, prettydoc, tibble, tidyr, ggforce, ggHoriPlot, AnnotationDbi, ggplotify, ggridges, grDevices, gridExtra, ggstar, scales, ggtreeExtra, tidydr

Linking To

Enhances

Depends On Me maEndToEnd

Imports Me CBNplot, ChIPseeker, clusterProfiler, debrowser, enrichViewNet, meshes, MicrobiomeProfiler, ReactomePA, RFLOMICS, TDbasedUFEadv, ExpHunterSuite

Suggests Me GeoTcgaData, mastR, methylGSA, scGraphVerse, tidybulk, ggpicrust2, ReporterScore, SCpubr

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package enrichplot_1.30.2.tar.gz

Windows Binary (x86_64) enrichplot_1.29.2.zip

macOS Binary (x86_64) enrichplot_1.30.0.tgz

macOS Binary (arm64) enrichplot_1.30.1.tgz

Source Repository git clone https://git.bioconductor.org/packages/enrichplot

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/enrichplot

Bioc Package Browser https://code.bioconductor.org/browse/enrichplot/

Package Short Url https://bioconductor.org/packages/enrichplot/

Package Downloads Report Download Stats

Old Source Packages for BioC 3.22 Source Archive