bluster

This is the released version of bluster; for the devel version, see bluster.

Clustering Algorithms for Bioconductor

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DOI: 10.18129/B9.bioc.bluster

Bioconductor version: Release (3.22)

Wraps common clustering algorithms in an easily extended S4 framework. Backends are implemented for hierarchical, k-means and graph-based clustering. Several utilities are also provided to compare and evaluate clustering results.

Author: Aaron Lun [aut, cre], Stephanie Hicks [ctb], Basil Courbayre [ctb], Tuomas Borman [ctb], Leo Lahti [ctb]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("bluster")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("bluster")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bluster")

1. Clustering algorithms HTML R Script

2. Clustering diagnostics HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Clustering, GeneExpression, ImmunoOncology, SingleCell, Software, Transcriptomics

Version 1.20.0

In Bioconductor since BioC 3.12 (R-4.0) (5 years)

License GPL-3

Depends

Imports stats, methods, utils, cluster, Matrix, Rcpp, igraph, S4Vectors, BiocParallel, BiocNeighbors

System Requirements C++17

URL

Suggests knitr, rmarkdown, testthat, BiocStyle, dynamicTreeCut, scRNAseq, scuttle, scater, scran, pheatmap, viridis, mbkmeans, kohonen, apcluster, DirichletMultinomial, vegan, fastcluster

Linking To Rcpp, assorthead

Enhances

Depends On Me OSCA.advanced, OSCA.basic, OSCA.intro, OSCA.multisample, OSCA.workflows, SingleRBook

Imports Me chevreulProcess, clustSIGNAL, concordexR, dandelionR, mia, miaDash, MPAC, poem, scDblFinder, scDiagnostics, scran, Voyager, Canek

Suggests Me anglemania, batchelor, ChromSCape, Coralysis, dittoSeq, Ibex, mbkmeans, miaViz, MOSim, mumosa, scLANE, sketchR, SuperCellCyto, SpatialDDLS, SuperCell

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package bluster_1.20.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64) bluster_1.20.0.tgz

macOS Binary (arm64) bluster_1.20.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/bluster

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/bluster

Bioc Package Browser https://code.bioconductor.org/browse/bluster/

Package Short Url https://bioconductor.org/packages/bluster/

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