bioCancer

This is the released version of bioCancer; for the devel version, see bioCancer.

Interactive Multi-Omics Cancers Data Visualization and Analysis

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DOI: 10.18129/B9.bioc.bioCancer

Bioconductor version: Release (3.22)

This package is a Shiny App to visualize and analyse interactively Multi-Assays of Cancer Genomic Data.

Author: Karim Mezhoud [aut, cre]

Maintainer: Karim Mezhoud <kmezhoud at gmail.com>

Citation (from within R, enter citation("bioCancer")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("bioCancer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bioCancer")

bioCancer: Interactive Multi-OMICS Cancers Data Visualization and Analysis HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DataRepresentation, GUI, GeneExpression, GeneTarget, MultipleComparison, Network, Pathways, Reactome, Software, Visualization

Version 1.38.0

In Bioconductor since BioC 3.4 (R-3.3) (9 years)

License AGPL-3 | file LICENSE

Depends R (>= 4.1.0), radiant.data (>= 0.9.1), cBioPortalData, XML (>= 3.98)

Imports R.oo, R.methodsS3, DT (>= 0.3), dplyr (>= 0.7.2), tidyr, shiny (>= 1.0.5), AlgDesign (>= 1.1.7.3), import (>= 1.1.0), methods, AnnotationDbi, shinythemes, Biobase, geNetClassifier, org.Hs.eg.db, org.Bt.eg.db, DOSE, clusterProfiler, reactome.db, ReactomePA, DiagrammeR (<= 1.01), visNetwork, htmlwidgets, plyr, tibble, GO.db

System Requirements

URL https://kmezhoud.github.io/bioCancer/

Bug Reports https://github.com/kmezhoud/bioCancer/issues

Suggests BiocStyle, prettydoc, rmarkdown, knitr, testthat (>= 0.10.0)

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package bioCancer_1.38.0.tar.gz

Windows Binary (x86_64) bioCancer_1.37.0.zip

macOS Binary (x86_64) bioCancer_1.38.0.tgz

macOS Binary (arm64) bioCancer_1.38.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/bioCancer

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/bioCancer

Bioc Package Browser https://code.bioconductor.org/browse/bioCancer/

Package Short Url https://bioconductor.org/packages/bioCancer/

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