- Home
- Bioconductor 3.22
- Software Packages
- InterCellar
InterCellar
This is the released version of InterCellar; for the devel version, see InterCellar.
InterCellar: an R-Shiny app for interactive analysis and exploration of cell-cell communication in single-cell transcriptomics
Bioconductor version: Release (3.22)
InterCellar is implemented as an R/Bioconductor Package containing a Shiny app that allows users to interactively analyze cell-cell communication from scRNA-seq data. Starting from precomputed ligand-receptor interactions, InterCellar provides filtering options, annotations and multiple visualizations to explore clusters, genes and functions. Finally, based on functional annotation from Gene Ontology and pathway databases, InterCellar implements data-driven analyses to investigate cell-cell communication in one or multiple conditions.
Author: Marta Interlandi [cre, aut] ORCID iD ORCID: 0000-0002-6863-2552
Maintainer: Marta Interlandi <marta.interlandi01 at gmail.com>
citation("InterCellar")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("InterCellar")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("InterCellar")
Details
See More
Package Archives
Follow Installation instructions to use this package in your R session.