Chicago

This is the released version of Chicago; for the devel version, see Chicago.

CHiCAGO: Capture Hi-C Analysis of Genomic Organization

Bioconductor version: Release (3.22)

A pipeline for analysing Capture Hi-C data.

Author: Jonathan Cairns, Paula Freire Pritchett, Steven Wingett, Mikhail Spivakov

Maintainer: Mikhail Spivakov <mikhail.spivakov at lms.mrc.ac.uk>

Citation (from within R, enter citation("Chicago")):

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("Chicago")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Chicago")

CHiCAGO Vignette HTML R Script

Reference Manual PDF

NEWS Text

Version 1.38.0

In Bioconductor since BioC 3.3 (R-3.3) (9.5 years)

License Artistic-2.0

Depends R (>= 3.3.1), data.table

Imports matrixStats, MASS, Hmisc, Delaporte, methods, grDevices, graphics, stats, utils

System Requirements

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Depends On Me PCHiCdata

Imports Me

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Follow Installation instructions to use this package in your R session.

Source Package Chicago_1.38.0.tar.gz

Windows Binary (x86_64) Chicago_1.37.1.zip

macOS Binary (x86_64) Chicago_1.38.0.tgz

macOS Binary (arm64) Chicago_1.38.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/Chicago

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Chicago

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