simPIC

This is the development version of simPIC; for the stable release version, see simPIC.

Flexible simulation of paired-insertion counts for single-cell ATAC-sequencing data

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DOI: 10.18129/B9.bioc.simPIC

Bioconductor version: Development (3.23)

simPIC is a package for simulating single-cell ATAC-seq count data. It provides a user-friendly, well documented interface for data simulation. Functions are provided for parameter estimation, realistic scATAC-seq data simulation, and comparing real and simulated datasets.

Author: Sagrika Chugh [aut, cre] ORCID iD ORCID: 0000-0002-8050-5214 , Heejung Shim [aut], Davis McCarthy [aut]

Maintainer: Sagrika Chugh <sagrika.chugh at gmail.com>

Citation (from within R, enter citation("simPIC")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("simPIC")

For older versions of R, please refer to the appropriate Bioconductor release.