motifStack

This is the development version of motifStack; for the stable release version, see motifStack.

Plot stacked logos for single or multiple DNA, RNA and amino acid sequence

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DOI: 10.18129/B9.bioc.motifStack

Bioconductor version: Development (3.23)

The motifStack package is designed for graphic representation of multiple motifs with different similarity scores. It works with both DNA/RNA sequence motif and amino acid sequence motif. In addition, it provides the flexibility for users to customize the graphic parameters such as the font type and symbol colors.

Author: Jianhong Ou, Michael Brodsky, Scot Wolfe and Lihua Julie Zhu

Maintainer: Jianhong Ou <jou at morgridge.org>

Citation (from within R, enter citation("motifStack")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("motifStack")

For older versions of R, please refer to the appropriate Bioconductor release.