RTopper

This is the development version of RTopper; for the stable release version, see RTopper.

This package is designed to perform Gene Set Analysis across multiple genomic platforms

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DOI: 10.18129/B9.bioc.RTopper

Bioconductor version: Development (3.23)

the RTopper package is designed to perform and integrate gene set enrichment results across multiple genomic platforms.

Author: Luigi Marchionni <marchion at jhu.edu>, Svitlana Tyekucheva <svitlana at jimmy.harvard.edu>

Maintainer: Luigi Marchionni <marchion at jhu.edu>

Citation (from within R, enter citation("RTopper")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("RTopper")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RTopper")

RTopper user's manual PDF R Script

Reference Manual PDF

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Microarray, Software

Version 1.57.0

In Bioconductor since BioC 2.9 (R-2.14) (14 years)

License GPL (>= 3) + file LICENSE

Depends R (>= 2.12.0), Biobase

Imports limma, multtest

System Requirements

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Suggests org.Hs.eg.db, KEGGREST, GO.db

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RTopper_1.57.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64) RTopper_1.57.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/RTopper

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RTopper

Bioc Package Browser https://code.bioconductor.org/browse/RTopper/

Package Short Url https://bioconductor.org/packages/RTopper/

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