ExperimentSubset

This is the development version of ExperimentSubset; for the stable release version, see ExperimentSubset.

Manages subsets of data with Bioconductor Experiment objects

Platform availability badge Ranking badge Support activity badge Years in BioConductor badge Build results badge Last commit badge Dependency count badge

DOI: 10.18129/B9.bioc.ExperimentSubset

Bioconductor version: Development (3.23)

Experiment objects such as the SummarizedExperiment or SingleCellExperiment are data containers for one or more matrix-like assays along with the associated row and column data. Often only a subset of the original data is needed for down-stream analysis. For example, filtering out poor quality samples will require excluding some columns before analysis. The ExperimentSubset object is a container to efficiently manage different subsets of the same data without having to make separate objects for each new subset.

Author: Irzam Sarfraz [aut, cre] ORCID iD ORCID: 0000-0001-8121-792X , Muhammad Asif [aut, ths] ORCID iD ORCID: 0000-0003-1839-2527 , Joshua D. Campbell [aut] ORCID iD ORCID: 0000-0003-0780-8662

Maintainer: Irzam Sarfraz <irzam9095 at gmail.com>

Citation (from within R, enter citation("ExperimentSubset")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ExperimentSubset")

For older versions of R, please refer to the appropriate Bioconductor release.