BioTIP

This is the development version of BioTIP; for the stable release version, see BioTIP.

BioTIP: An R package for characterization of Biological Tipping-Point

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DOI: 10.18129/B9.bioc.BioTIP

Bioconductor version: Development (3.23)

Adopting tipping-point theory to transcriptome profiles to unravel disease regulatory trajectory.

Author: Zhezhen Wang, Andrew Goldstein, Yuxi Sun, Biniam Feleke, Qier An, Antonio Feliciano, Xinan Yang

Maintainer: Felix Yu <felixy at uchicago.edu> and X Holly Yang <xyang2 at uchicago.edu>

Citation (from within R, enter citation("BioTIP")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("BioTIP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BioTIP")

BioTIP- an R package for characterization of Biological Tipping-Point HTML R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews GeneExpression, RNASeq, Sequencing, Software, Transcription

Version 1.25.0

In Bioconductor since BioC 3.10 (R-3.6) (6 years)

License GPL-2

Depends R (>= 3.6)

Imports igraph, cluster, psych, stringr, GenomicRanges, MASS, scran, methods, stats, utils, grDevices, graphics, foreach, doParallel

System Requirements

URL https://github.com/xyang2uchicago/BioTIP

Suggests knitr, markdown, base, rmarkdown, ggplot2

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BioTIP_1.25.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/BioTIP

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BioTIP

Bioc Package Browser https://code.bioconductor.org/browse/BioTIP/

Package Short Url https://bioconductor.org/packages/BioTIP/

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