BBCAnalyzer

This is the development version of BBCAnalyzer; for the stable release version, see BBCAnalyzer.

BBCAnalyzer: an R/Bioconductor package for visualizing base counts

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DOI: 10.18129/B9.bioc.BBCAnalyzer

Bioconductor version: Development (3.23)

BBCAnalyzer is a package for visualizing the relative or absolute number of bases, deletions and insertions at defined positions in sequence alignment data available as bam files in comparison to the reference bases. Markers for the relative base frequencies, the mean quality of the detected bases, known mutations or polymorphisms and variants called in the data may additionally be included in the plots.

Author: Sarah Sandmann

Maintainer: Sarah Sandmann <sarah.sandmann at uni-muenster.de>

Citation (from within R, enter citation("BBCAnalyzer")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("BBCAnalyzer")

For older versions of R, please refer to the appropriate Bioconductor release.