Open Biological and Biomedical Ontology Foundry
Community development of interoperable ontologies for the biological sciences

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OBO Library: find, use, and contribute to community ontologies

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Download table as: [ YAML | JSON-LD | RDF/Turtle ] ado Alzheimer's Disease Ontology CC BY 4.0 Alzheimer's Disease Ontology is a knowledge-based ontology that encompasses varieties of concepts related to Alzheimer'S Disease, structu... Detail GitHub Repo stars
afpo African Population Ontology CC BY 4.0 AfPO is an ontology that can be used in the study of diverse populations across Africa. It brings together publicly available demographic... Detail GitHub Repo stars
agro Agronomy Ontology CC BY 4.0 Ontology of agronomic practices, agronomic techniques, and agronomic variables used in agronomic experiments Detail GitHub Repo stars
aism Ontology for the Anatomy of the Insect SkeletoMuscular system (AISM) CC BY 4.0 The AISM contains terms used in insect biodiversity research for describing structures of the exoskeleton and the skeletomuscular system.... Detail GitHub Repo stars amphx The Amphioxus Development and Anatomy Ontology CC BY 3.0 An ontology for the development and anatomy of Amphioxus (Branchiostoma lanceolatum). Detail GitHub Repo stars apo Ascomycete phenotype ontology CC BY 4.0 A structured controlled vocabulary for the phenotypes of Ascomycete fungi Detail GitHub Repo stars apollo_sv Apollo Structured Vocabulary CC BY 4.0 An OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation. Detail GitHub Repo stars aro Antibiotic Resistance Ontology CC BY 4.0 Antibiotic resistance genes and mutations Detail GitHub Repo stars bco Biological Collections Ontology CC0 1.0 An ontology to support the interoperability of biodiversity data, including data on museum collections, environmental/metagenomic samples... Detail GitHub Repo stars
bfo Basic Formal Ontology CC BY 4.0 The upper level ontology upon which OBO Foundry ontologies are built. Detail GitHub Repo stars
bmont Biomarker Ontology CC BY 4.0 An application ontology that represents comprehensive knowledge involving a variety of fields of medical and biological aspects. Detail GitHub Repo stars bspo Biological Spatial Ontology CC BY 3.0 An ontology for representing spatial concepts, anatomical axes, gradients, regions, planes, sides, and surfaces Detail GitHub Repo stars bto BRENDA tissue / enzyme source CC BY 4.0 A structured controlled vocabulary for the source of an enzyme comprising tissues, cell lines, cell types and cell cultures. Detail GitHub Repo stars cdao Comparative Data Analysis Ontology CC0 1.0 a formalization of concepts and relations relevant to evolutionary comparative analysis Detail GitHub Repo stars cdno Compositional Dietary Nutrition Ontology CC BY 3.0 CDNO provides structured terminologies to describe nutritional attributes of material entities that contribute to human diet. Detail GitHub Repo stars
chebi Chemical Entities of Biological Interest CC BY 4.0 A structured classification of molecular entities of biological interest focusing on 'small' chemical compounds. Detail GitHub Repo stars
cheminf Chemical Information Ontology CC0 1.0 Includes terms for the descriptors commonly used in cheminformatics software applications and the algorithms which generate them. Detail GitHub Repo stars chiro CHEBI Integrated Role Ontology CC0 1.0 CHEBI provides a distinct role hierarchy. Chemicals in the structural hierarchy are connected via a 'has role' relation. CHIRO provides l... Detail GitHub Repo stars chmo Chemical Methods Ontology CC BY 4.0 CHMO, the chemical methods ontology, describes methods used to Detail GitHub Repo stars cido Coronavirus Infectious Disease Ontology CC BY 4.0 The Coronavirus Infectious Disease Ontology (CIDO) aims to ontologically represent and standardize various aspects of coronavirus infecti... Detail GitHub Repo stars cio Confidence Information Ontology CC0 1.0 An ontology to capture confidence information about annotations. Detail GitHub Repo stars cl Cell Ontology CC BY 4.0 The Cell Ontology is a structured controlled vocabulary for cell types in animals. Detail GitHub Repo stars clao Collembola Anatomy Ontology CC0 1.0 CLAO is an ontology of anatomical terms employed in morphological descriptions for the Class Collembola (Arthropoda: Hexapoda). Detail GitHub Repo stars clo Cell Line Ontology CC BY 3.0 An ontology to standardize and integrate cell line information and to support computer-assisted reasoning. Detail GitHub Repo stars clyh Clytia hemisphaerica Development and Anatomy Ontology CC BY 3.0 The Clytia hemisphaerica Development and Anatomy Ontology (CLYH) describes the anatomical and developmental features of the Clytia hemisp... Detail GitHub Repo stars cmo Clinical measurement ontology CC0 1.0 Morphological and physiological measurement records generated from clinical and model organism research and health programs. Detail GitHub Repo stars cob Core Ontology for Biology and Biomedicine CC0 1.0 COB brings together key terms from a wide range of OBO projects to improve interoperability. Detail GitHub Repo stars colao Coleoptera Anatomy Ontology (COLAO) CC BY 4.0 The Coleoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of beetles in biodiversity research. It has ... Detail GitHub Repo stars cro Contributor Role Ontology CC BY 2.0 A classification of the diverse roles performed in the work leading to a published research output in the sciences. Its purpose to provid... Detail GitHub Repo stars cteno Ctenophore Ontology CC BY 3.0 An anatomical and developmental ontology for ctenophores (Comb Jellies) Detail GitHub Repo stars cto CTO: Core Ontology of Clinical Trials CC BY 4.0 The core Ontology of Clinical Trials (CTO) will serve as a structured resource integrating basic terms and concepts in the context of cli... Detail GitHub Repo stars cvdo Cardiovascular Disease Ontology CC BY 4.0 An ontology to describe entities related to cardiovascular diseases Detail GitHub Repo stars ddanat Dictyostelium discoideum anatomy CC0 1.0 A structured controlled vocabulary of the anatomy of the slime-mold Dictyostelium discoideum Detail GitHub Repo stars ddpheno Dictyostelium discoideum phenotype ontology CC0 1.0 A structured controlled vocabulary of phenotypes of the slime-mould Dictyostelium discoideum. Detail GitHub Repo stars dideo Drug-drug Interaction and Drug-drug Interaction Evidence Ontology CC BY 4.0 The Potential Drug-drug Interaction and Potential Drug-drug Interaction Evidence Ontology Detail GitHub Repo stars disdriv Disease Drivers Ontology CC0 1.0 Ontology for drivers and triggers of human diseases, built to classify ExO ontology exposure stressors. An application ontology. Built in... Detail GitHub Repo stars
doid Human Disease Ontology CC0 1.0 An ontology for describing the classification of human diseases organized by etiology. Detail GitHub Repo stars
dpo Drosophila Phenotype Ontology CC BY 4.0 An ontology of commonly encountered and/or high level Drosophila phenotypes. Detail GitHub Repo stars dron The Drug Ontology CC BY 3.0 An ontology to support comparative effectiveness researchers studying claims data. Detail GitHub Repo stars duo Data Use Ontology CC BY 4.0 DUO is an ontology which represent data use conditions. Detail GitHub Repo stars ecao The Echinoderm Anatomy and Development Ontology CC BY 3.0 An ontology for the development and anatomy of the different species of the phylum Echinodermata (NCBITaxon:7586). Detail GitHub Repo stars eco Evidence and Conclusion Ontology CC0 1.0 An ontology for experimental and other evidence statements. Detail GitHub Repo stars ecocore An ontology of core ecological entities CC BY 3.0 Ecocore is a community ontology for the concise and controlled description of ecological traits of organisms. Detail GitHub Repo stars ecto Environmental conditions, treatments and exposures ontology CC0 1.0 ECTO describes exposures to experimental treatments of plants and model organisms (e.g. exposures to modification of diet, lighting level... Detail GitHub Repo stars emapa Mouse Developmental Anatomy Ontology CC BY 4.0 An ontology for mouse anatomy covering embryonic development and postnatal stages. Detail GitHub Repo stars envo Environment Ontology CC0 1.0 An ontology of environmental systems, components, and processes. Detail GitHub Repo stars epio Epilepsy Ontology CC BY 4.0 A application driven Epilepsy Ontology with official terms from the ILAE. Detail GitHub Repo stars exmo Exercise Medicine Ontology CC BY 4.0 A core reference ontology built upon BFO about exercise medicine and it contains the related terms for healthy people, people with chroni... Detail GitHub Repo stars exo Exposure ontology CC BY 4.0 Vocabularies for describing exposure data to inform understanding of environmental health. Detail GitHub Repo stars fao Fungal gross anatomy CC0 1.0 A structured controlled vocabulary for the anatomy of fungi. Detail GitHub Repo stars fbbt Drosophila gross anatomy CC BY 4.0 An ontology representing the gross anatomy of Drosophila melanogaster. Detail GitHub Repo stars fbcv FlyBase Controlled Vocabulary CC BY 4.0 A structured controlled vocabulary used for various aspects of annotation by FlyBase. Detail GitHub Repo stars fbdv Drosophila development CC BY 4.0 A structured controlled vocabulary of the development of Drosophila melanogaster. Detail GitHub Repo stars fideo Food Interactions with Drugs Evidence Ontology CC0 1.0 Food-Drug interactions automatically extracted from scientific literature Detail flopo Flora Phenotype Ontology CC0 1.0 Traits and phenotypes of flowering plants occurring in digitized Floras Detail GitHub Repo stars fobi Food-Biomarker Ontology CC BY 3.0 FOBI (Food-Biomarker Ontology) is an ontology to represent food intake data and associate it with metabolomic data Detail GitHub Repo stars foodon Food Ontology CC BY 4.0 A broadly scoped ontology representing entities which bear a "food role". It encompasses materials in natural ecosystems and agriculture ... Detail GitHub Repo stars fovt FuTRES Ontology of Vertebrate Traits CC0 1.0 FuTRES Ontology of Vertebrate Traits is an application ontology used to convert vertebrate trait data in spreadsheet to triples. FOVT lev... Detail GitHub Repo stars fypo Fission Yeast Phenotype Ontology CC BY 4.0 FYPO is a formal ontology of phenotypes observed in fission yeast. Detail GitHub Repo stars gallont Plant Gall Ontology CC0 1.0 Ontology of plant gall phenotypes. Plant galls are novel plant structures, generated by plants in response to biotic stressors. This onto... Detail GitHub Repo stars gecko Genomics Cohorts Knowledge Ontology CC BY 4.0 An ontology to represent genomics cohort attributes Detail GitHub Repo stars genepio Genomic Epidemiology Ontology CC BY 3.0 The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associ... Detail GitHub Repo stars geno Genotype Ontology CC BY 4.0 An integrated ontology for representing the genetic variations described in genotypes, and their causal relationships to phenotype and di... Detail GitHub Repo stars geo Geographical Entity Ontology CC BY 4.0 An ontology of geographical entities Detail GitHub Repo stars gno Glycan Naming and Subsumption Ontology (GNOme) CC BY 4.0 GlyTouCan provides stable accessions for glycans described at varyious degrees of characterization, including compositions (no linkage) a... Detail GitHub Repo stars
go Gene Ontology CC BY 4.0 An ontology for describing the function of genes and gene products Detail GitHub Repo stars
hancestro Human Ancestry Ontology CC BY 4.0 The Human Ancestry Ontology (HANCESTRO) provides a systematic description of the ancestry concepts used in the NHGRI-EBI Catalog of publi... Detail GitHub Repo stars hao Hymenoptera Anatomy Ontology CC0 1.0 A structured controlled vocabulary of the anatomy of the Hymenoptera (bees, wasps, and ants) Detail GitHub Repo stars hom Homology Ontology CC0 1.0 This ontology represents concepts related to homology, as well as other concepts used to describe similarity and non-homology. Detail GitHub Repo stars hsapdv Human Developmental Stages CC BY 3.0 Life cycle stages for Human Detail GitHub Repo stars hso Health Surveillance Ontology CC BY 3.0 The health Surveillance Ontology (HSO) focuses on "surveillance system level data", that is, data outputs from surveillance activities, s... Detail GitHub Repo stars htn Hypertension Ontology CC BY 4.0 An ontology for representing clinical data about hypertension, intended to support classification of patients according to various diagno... Detail GitHub Repo stars iao Information Artifact Ontology CC BY 4.0 An ontology of information entities. Detail GitHub Repo stars iceo Integrative and Conjugative Element Ontology CC BY 4.0 ICEO is an integrated biological ontology for the description of bacterial integrative and conjugative elements (ICEs). Detail GitHub Repo stars ico Informed Consent Ontology CC BY 4.0 An ontology of clinical informed consents Detail GitHub Repo stars ido Infectious Disease Ontology CC BY 3.0 A set of interoperable ontologies that will together provide coverage of the infectious disease domain. IDO core is the upper-level ontol... Detail GitHub Repo stars ino Interaction Network Ontology CC BY 3.0 An ontology of interactions and interaction networks Detail GitHub Repo stars labo clinical LABoratory Ontology CC BY 4.0 LABO is an ontology of informational entities formalizing clinical laboratory tests prescriptions and reporting documents. Detail GitHub Repo stars lepao Lepidoptera Anatomy Ontology CC BY 4.0 The Lepidoptera Anatomy Ontology contains terms used for describing the anatomy and phenotype of moths and butterflies in biodiversity re... Detail GitHub Repo stars ma Mouse adult gross anatomy CC BY 4.0 A structured controlled vocabulary of the adult anatomy of the mouse (Mus). Detail GitHub Repo stars maxo Medical Action Ontology CC BY 4.0 The Medical Action Ontology (MAxO) provides a broad view of medical actions and includes terms for medical procedures, interventions, the... Detail GitHub Repo stars mco Microbial Conditions Ontology CC BY 3.0 Microbial Conditions Ontology is an ontology... Detail GitHub Repo stars mcro Model Card Report Ontology CC BY 4.0 An ontology representing the structure of model card reports - reports that describe basic characteristics of machine learning models for... Detail GitHub Repo stars mf Mental Functioning Ontology CC BY 3.0 The Mental Functioning Ontology is an overarching ontology for all aspects of mental functioning. Detail GitHub Repo stars mfoem Emotion Ontology CC BY 3.0 An ontology of affective phenomena such as emotions, moods, appraisals and subjective feelings. Detail GitHub Repo stars mfomd Mental Disease Ontology CC BY 3.0 An ontology to describe and classify mental diseases such as schizophrenia, annotated with DSM-IV and ICD codes where applicable Detail GitHub Repo stars mi Molecular Interactions Controlled Vocabulary CC BY 4.0 A structured controlled vocabulary for the annotation of experiments concerned with protein-protein interactions. Detail GitHub Repo stars miapa MIAPA Ontology CC0 1.0 An application ontology to formalize annotation of phylogenetic data. Detail GitHub Repo stars mmo Measurement method ontology CC0 1.0 A representation of the variety of methods used to make clinical and phenotype measurements. Detail GitHub Repo stars mmusdv Mouse Developmental Stages CC BY 3.0 Life cycle stages for Mus Musculus Detail GitHub Repo stars mod Protein modification CC BY 4.0 PSI-MOD is an ontology consisting of terms that describe protein chemical modifications Detail GitHub Repo stars mondo Mondo Disease Ontology CC BY 4.0 A global community effort to harmonize multiple disease resources to yield a coherent merged ontology. Detail GitHub Repo stars mop Molecular Process Ontology CC BY 4.0 Processes at the molecular level Detail GitHub Repo stars mp Mammalian Phenotype Ontology CC BY 4.0 Standard terms for annotating mammalian phenotypic data. Detail GitHub Repo stars mpath Mouse pathology ontology CC BY 3.0 A structured controlled vocabulary of mutant and transgenic mouse pathology phenotypes Detail GitHub Repo stars mpio Minimum PDDI Information Ontology CC BY 4.0 An ontology of minimum information regarding potential drug-drug interaction information. Detail GitHub Repo stars mro MHC Restriction Ontology CC BY 3.0 An ontology for Major Histocompatibility Complex (MHC) restriction in experiments Detail GitHub Repo stars ms Mass spectrometry ontology CC BY 3.0 A structured controlled vocabulary for the annotation of experiments concerned with proteomics mass spectrometry. Detail GitHub Repo stars nbo Neuro Behavior Ontology CC BY 3.0 An ontology of human and animal behaviours and behavioural phenotypes Detail GitHub Repo stars ncbitaxon NCBI organismal classification CC0 1.0 An ontology representation of the NCBI organismal taxonomy Detail GitHub Repo stars ncit NCI Thesaurus OBO Edition CC BY 4.0 NCI Thesaurus (NCIt)is a reference terminology that includes broad coverage of the cancer domain, including cancer related diseases, find... Detail GitHub Repo stars ncro Non-Coding RNA Ontology CC BY 4.0 An ontology for non-coding RNA, both of biological origin, and engineered. Detail GitHub Repo stars ngbo Next Generation Biobanking Ontology CC BY 4.0 The Next Generation Biobanking Ontology (NGBO) is an open application ontology representing contextual data about omics digital assets in... Detail GitHub Repo stars nomen NOMEN - A nomenclatural ontology for biological names CC0 1.0 NOMEN is a nomenclatural ontology for biological names (not concepts). It encodes the goverened rules of nomenclature. Detail GitHub Repo stars oae Ontology of Adverse Events CC BY 3.0 A biomedical ontology in the domain of adverse events Detail GitHub Repo stars oarcs Ontology of Arthropod Circulatory Systems CC BY 3.0 OArCS is an ontology describing the Arthropod ciruclatory system. Detail GitHub Repo stars oba Ontology of Biological Attributes CC0 1.0 A collection of biological attributes (traits) covering all kingdoms of life. Detail GitHub Repo stars obcs Ontology of Biological and Clinical Statistics CC BY 4.0 A biomedical ontology in the domain of biological and clinical statistics. Detail GitHub Repo stars
obi Ontology for Biomedical Investigations CC BY 4.0 An integrated ontology for the description of life-science and clinical investigations Detail GitHub Repo stars
obib Ontology for Biobanking CC BY 4.0 An ontology built for annotation and modeling of biobank repository and biobanking administration Detail GitHub Repo stars occo Occupation Ontology CC BY 4.0 An ontology representing occupations. It is designed to facilitate harmonization of existing occupation standards, such as the US Bureau ... Detail GitHub Repo stars ogg The Ontology of Genes and Genomes CC BY 3.0 A formal ontology of genes and genomes of biological organisms. Detail ogms Ontology for General Medical Science CC BY 4.0 An ontology for representing treatment of disease and diagnosis and on carcinomas and other pathological entities Detail GitHub Repo stars ohd Oral Health and Disease Ontology CC BY 4.0 The Oral Health and Disease Ontology is used for representing the diagnosis and treatment of dental maladies. Detail GitHub Repo stars ohmi Ontology of Host-Microbiome Interactions CC BY 4.0 The Ontology of Host-Microbiome Interactions aims to ontologically represent and standardize various entities and relations related to mi... Detail GitHub Repo stars ohpi Ontology of Host Pathogen Interactions CC BY 4.0 OHPI is a community-driven ontology of host-pathogen interactions (OHPI) and represents the virulence factors (VFs) and how the mutants o... Detail GitHub Repo stars omit Ontology for MIRNA Target CC BY 3.0 Ontology to establish data exchange standards and common data elements in the microRNA (miR) domain Detail GitHub Repo stars omo OBO Metadata Ontology CC0 1.0 An ontology specifies terms that are used to annotate ontology terms for all OBO ontologies. The ontology was developed as part of Inform... Detail GitHub Repo stars omp Ontology of Microbial Phenotypes CC BY 3.0 An ontology of phenotypes covering microbes Detail GitHub Repo stars omrse Ontology for Modeling and Representation of Social Entities CC BY 4.0 The Ontology for Modeling and Representation of Social Entities (OMRSE) is an OBO Foundry ontology that represents the various entities t... Detail GitHub Repo stars one Ontology for Nutritional Epidemiology CC BY 4.0 An ontology to standardize research output of nutritional epidemiologic studies. Detail GitHub Repo stars ons Ontology for Nutritional Studies CC BY 4.0 An ontology for description of concepts in the nutritional studies domain. Detail GitHub Repo stars ontoavida OntoAvida: ontology for Avida digital evolution platform CC BY 4.0 OntoAvida develops an integrated vocabulary for the description of the most widely-used computational approach for studying evolution usi... Detail ontoneo Obstetric and Neonatal Ontology CC BY 3.0 The Obstetric and Neonatal Ontology is a structured controlled vocabulary to provide a representation of the data from electronic health ... Detail GitHub Repo stars oostt Ontology of Organizational Structures of Trauma centers and Trauma systems CC BY 4.0 An ontology built for representating the organizational components of trauma centers and trauma systems. Detail GitHub Repo stars opl Ontology for Parasite LifeCycle CC BY 4.0 A reference ontology for parasite life cycle stages. Detail GitHub Repo stars opmi Ontology of Precision Medicine and Investigation CC BY 4.0 The Ontology of Precision Medicine and Investigation (OPMI) aims to ontologically represent and standardize various entities and relation... Detail GitHub Repo stars ornaseq Ontology of RNA Sequencing CC BY 4.0 An application ontology designed to annotate next-generation sequencing experiments performed on RNA. Detail GitHub Repo stars ovae Ontology of Vaccine Adverse Events CC BY 3.0 A biomedical ontology in the domain of vaccine adverse events. Detail GitHub Repo stars
pato Phenotype And Trait Ontology CC BY 3.0 An ontology of phenotypic qualities (properties, attributes or characteristics) Detail GitHub Repo stars
pcl Provisional Cell Ontology CC BY 4.0 Cell types that are provisionally defined by experimental techniques such as single cell or single nucleus transcriptomics rather than a ... Detail GitHub Repo stars pco Population and Community Ontology CC0 1.0 An ontology about groups of interacting organisms such as populations and communities Detail GitHub Repo stars pdro The Prescription of Drugs Ontology CC BY 4.0 An ontology to describe entities related to prescription of drugs Detail GitHub Repo stars peco Plant Experimental Conditions Ontology CC BY 4.0 A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experime... Detail GitHub Repo stars phipo Pathogen Host Interaction Phenotype Ontology CC BY 3.0 PHIPO is a formal ontology of species-neutral phenotypes observed in pathogen-host interactions. Detail GitHub Repo stars plana planaria-ontology CC BY 3.0 PLANA, the planarian anatomy ontology, encompasses the anatomy and life cycle stages for both __Schmidtea mediterranea__ biotypes. Detail GitHub Repo stars planp Planarian Phenotype Ontology CC BY 3.0 Planarian Phenotype Ontology is an ontology of phenotypes observed in the planarian Schmidtea mediterranea. Detail GitHub Repo stars
po Plant Ontology CC BY 4.0 The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to pl... Detail GitHub Repo stars
poro Porifera Ontology CC BY 3.0 An ontology covering the anatomy of the taxon Porifera (sponges) Detail GitHub Repo stars ppo Plant Phenology Ontology CC BY 3.0 An ontology for describing the phenology of individual plants and populations of plants, and for integrating plant phenological data acro... Detail GitHub Repo stars
pr PRotein Ontology (PRO) CC BY 4.0 An ontological representation of protein-related entities Detail GitHub Repo stars
proco Process Chemistry Ontology CC BY 4.0 PROCO covers process chemistry, the chemical field concerned with scaling up laboratory syntheses to commercially viable processes. Detail GitHub Repo stars psdo Performance Summary Display Ontology CC BY 3.0 Ontology to reproducibly study visualizations of clinical performance Detail GitHub Repo stars pso Plant Stress Ontology CC BY 3.0 The Plant Stress Ontology describes biotic and abiotic stresses that a plant may encounter. Detail GitHub Repo stars pw Pathway ontology CC BY 4.0 A controlled vocabulary for annotating gene products to pathways. Detail GitHub Repo stars rbo Radiation Biology Ontology CC BY 3.0 RBO is an ontology for the effects of radiation on biota in terrestrial and space environments. Detail GitHub Repo stars ro Relation Ontology CC0 1.0 Relationship types shared across multiple ontologies Detail GitHub Repo stars rs Rat Strain Ontology CC BY 4.0 Ontology of rat strains Detail GitHub Repo stars rxno Name Reaction Ontology CC BY 4.0 Connects organic name reactions to their roles in an organic synthesis and to processes in MOP Detail GitHub Repo stars sepio Scientific Evidence and Provenance Information Ontology CC BY 3.0 An ontology for representing the provenance of scientific claims and the evidence that supports them. Detail GitHub Repo stars slso Space Life Sciences Ontology CC BY 3.0 The Space Life Sciences Ontology is an application ontology and is intended to support the operation of NASA's Life Sciences Data Archive... Detail GitHub Repo stars so Sequence types and features ontology CC BY 4.0 A structured controlled vocabulary for sequence annotation, for the exchange of annotation data and for the description of sequence objec... Detail GitHub Repo stars spd Spider Ontology CC BY 3.0 An ontology for spider comparative biology including anatomical parts (e.g. leg, claw), behavior (e.g. courtship, combing) and products (... Detail GitHub Repo stars stato The Statistical Methods Ontology CC BY 3.0 STATO is a general-purpose STATistics Ontology. Its aim is to provide coverage for processes such as statistical tests, their conditions ... Detail GitHub Repo stars swo Software ontology CC BY 4.0 The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. It... Detail GitHub Repo stars symp Symptom Ontology CC0 1.0 An ontology of disease symptoms, with symptoms encompasing perceived changes in function, sensations or appearance reported by a patient ... Detail GitHub Repo stars t4fs terms4FAIRskills CC BY 4.0 A terminology for the skills necessary to make data FAIR and to keep it FAIR. Detail GitHub Repo stars taxrank Taxonomic rank vocabulary CC0 1.0 A vocabulary of taxonomic ranks (species, family, phylum, etc) Detail GitHub Repo stars to Plant Trait Ontology CC BY 4.0 A controlled vocabulary to describe phenotypic traits in plants. Detail GitHub Repo stars trans Pathogen Transmission Ontology CC0 1.0 An ontology representing the disease transmission process during which the pathogen is transmitted directly or indirectly from its natura... Detail GitHub Repo stars tto Teleost taxonomy ontology CC0 1.0 An ontology covering the taxonomy of teleosts (bony fish) Detail GitHub Repo stars txpo Toxic Process Ontology CC BY 3.0 TOXic Process Ontology (TXPO) systematizes a wide variety of terms involving toxicity courses and processes. The first version of TXPO fo... Detail GitHub Repo stars uberon Uberon multi-species anatomy ontology CC BY 3.0 An integrated cross-species anatomy ontology covering animals and bridging multiple species-specific ontologies Detail GitHub Repo stars uo Units of measurement ontology CC BY 3.0 Metrical units for use in conjunction with PATO Detail GitHub Repo stars upheno Unified Phenotype Ontology (uPheno) CC0 1.0 The uPheno ontology integrates multiple phenotype ontologies into a unified cross-species phenotype ontology. Detail GitHub Repo stars vbo Vertebrate Breed Ontology CC BY 4.0 Vertebrate Breed Ontology is an ontology created to serve as a single computable resource for vertebrate breed names. Detail GitHub Repo stars vo Vaccine Ontology CC BY 4.0 VO is a biomedical ontology in the domain of vaccine and vaccination. Detail GitHub Repo stars vt Vertebrate trait ontology CC BY 4.0 An ontology of traits covering vertebrates Detail GitHub Repo stars vto Vertebrate Taxonomy Ontology CC0 1.0 Comprehensive hierarchy of extinct and extant vertebrate taxa. Detail GitHub Repo stars wbbt C. elegans Gross Anatomy Ontology CC BY 4.0 A structured controlled vocabulary of the anatomy of Caenorhabditis elegans. Detail GitHub Repo stars wbls C. elegans development ontology CC BY 4.0 A structured controlled vocabulary of the development of Caenorhabditis elegans. Detail GitHub Repo stars wbphenotype C. elegans phenotype CC BY 4.0 A structured controlled vocabulary of Caenorhabditis elegans phenotypes Detail GitHub Repo stars
xao Xenopus Anatomy Ontology CC BY 3.0 XAO represents the anatomy and development of the African frogs Xenopus laevis and tropicalis. Detail GitHub Repo stars
xco Experimental condition ontology CC0 1.0 Conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model ... Detail GitHub Repo stars xlmod HUPO-PSI cross-linking and derivatization reagents controlled vocabulary CC BY 3.0 A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry. Detail GitHub Repo stars xpo Xenopus Phenotype Ontology CC BY 3.0 XPO represents anatomical, cellular, and gene function phenotypes occurring throughout the development of the African frogs Xenopus laevi... Detail GitHub Repo stars zeco Zebrafish Experimental Conditions Ontology CC BY 3.0 Experimental conditions applied to zebrafish, developed to facilitate experiment condition annotation at ZFIN Detail GitHub Repo stars
zfa Zebrafish anatomy and development ontology CC BY 3.0 A structured controlled vocabulary of the anatomy and development of the Zebrafish Detail GitHub Repo stars
zfs Zebrafish developmental stages ontology CC BY 3.0 Developmental stages of the Zebrafish Detail GitHub Repo stars zp Zebrafish Phenotype Ontology CC BY 3.0 The Zebrafish Phenotype Ontology formally defines all phenotypes of the Zebrafish model organism. Detail GitHub Repo stars gsso Gender, Sex, and Sexual Orientation (GSSO) ontology Apache 2.0 License The Gender, Sex, and Sexual Orientation (GSSO) ontology has terms for annotating interdisciplinary information concerning gender, sex, an... Detail GitHub Repo stars hp Human Phenotype Ontology (HPO) hpo The Human Phenotype Ontology (HPO) is a structured and controlled vocabulary for the phenotypic features encountered in human hereditary ... Detail GitHub Repo stars kisao Kinetic Simulation Algorithm Ontology Artistic License 2.0 A classification of algorithms for simulating biology, their parameters, and their outputs Detail GitHub Repo stars sbo Systems Biology Ontology Artistic License 2.0 Terms commonly used in Systems Biology, and in particular in computational modeling. Detail GitHub Repo stars scdo Sickle Cell Disease Ontology GPL-3.0 An ontology for the standardization of terminology and integration of knowledge about Sickle Cell Disease. Detail GitHub Repo stars
fix Physico-chemical methods and properties An ontology of physico-chemical methods and properties. Detail
mamo Mathematical modeling ontology Artistic License 2.0 The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, thei... Detail
rex Physico-chemical process An ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time. Detail
sibo Social Insect Behavior Ontology CC BY 3.0 Social Behavior in insects Detail GitHub Repo stars
vario Variation Ontology CC BY 4.0 Variation Ontology, VariO, is an ontology for standardized, systematic description of effects, consequences and mechanisms of variations. Detail
eupath VEuPathDB ontology CC BY 4.0 An ontology is developed to support Eukaryotic Pathogen, Host & Vector Genomics Resource (VEuPathDB; https://veupathdb.org). inactive Detail GitHub Repo stars
fbbi Biological Imaging Methods Ontology CC BY 4.0 A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research. inactive Detail GitHub Repo stars
mfmo Mammalian Feeding Muscle Ontology CC BY 3.0 The Mammalian Feeding Muscle Ontology is an antomy ontology for the muscles of the head and neck that participate in feeding, swallowing,... inactive Detail GitHub Repo stars
micro Ontology of Prokaryotic Phenotypic and Metabolic Characters CC BY 2.0 An ontology of prokaryotic phenotypic and metabolic characters inactive Detail GitHub Repo stars
ogsf Ontology of Genetic Susceptibility Factor CC BY 3.0 An application ontology to represent genetic susceptibility to a specific disease, adverse event, or a pathological process. inactive Detail GitHub Repo stars
olatdv Medaka Developmental Stages CC BY 3.0 Life cycle stages for Medaka inactive Detail GitHub Repo stars
pdumdv Platynereis Developmental Stages CC BY 3.0 Life cycle stages for Platynereis dumerilii inactive Detail GitHub Repo stars
aeo Anatomical Entity Ontology CC BY 4.0 AEO is an ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology inactive Detail GitHub Repo stars
ceph Cephalopod Ontology CC BY 3.0 An anatomical and developmental ontology for cephalopods inactive Detail GitHub Repo stars
ehdaa2 Human developmental anatomy, abstract CC BY 4.0 A structured controlled vocabulary of stage-specific anatomical structures of the developing human. inactive Detail GitHub Repo stars
fma Foundational Model of Anatomy Ontology (subset) CC BY 3.0 This is currently a slimmed down version of FMA inactive Detail
gaz Gazetteer CC0 1.0 A gazetteer constructed on ontological principles. The countries are actively maintained. inactive Detail GitHub Repo stars
idomal Malaria Ontology CC0 1.0 An application ontology to cover all aspects of malaria as well as the intervention attempts to control it. inactive Detail GitHub Repo stars
miro Mosquito insecticide resistance Application ontology for entities related to insecticide resistance in mosquitos inactive Detail GitHub Repo stars
rnao RNA ontology CC0 1.0 Controlled vocabulary pertaining to RNA function and based on RNA sequences, secondary and three-dimensional structures. inactive Detail GitHub Repo stars
tads Tick Anatomy Ontology CC BY 4.0 The anatomy of the Tick, Families: Ixodidae, Argassidae inactive Detail GitHub Repo stars
tgma Mosquito gross anatomy ontology CC0 1.0 A structured controlled vocabulary of the anatomy of mosquitoes. inactive Detail GitHub Repo stars
upa Unipathway CC BY 3.0 A manually curated resource for the representation and annotation of metabolic pathways inactive Detail GitHub Repo stars
(削除) aao (削除ここまで) (削除) Amphibian gross anatomy (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) adw (削除ここまで) (削除) Animal natural history and life history (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) aero (削除ここまで) (削除) Adverse Event Reporting Ontology (削除ここまで) CC BY 3.0 (削除) The Adverse Event Reporting Ontology (AERO) is an ontology aimed at supporting clinicians at the time of data entry, increasing quality a... (削除ここまで) obsolete Detail
(削除) ato (削除ここまで) (削除) Amphibian taxonomy (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) bcgo (削除ここまで) (削除) Beta Cell Genomics Ontology (削除ここまで) CC BY 3.0 (削除) An application ontology built for beta cell genomics studies. (削除ここまで) obsolete Detail GitHub Repo stars
(削除) bila (削除ここまで) (削除) Bilateria anatomy (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) bootstrep (削除ここまで) (削除) Gene Regulation Ontology (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) caro (削除ここまで) (削除) Common Anatomy Reference Ontology (削除ここまで) CC BY 4.0 (削除) An upper level ontology to facilitate interoperability between existing anatomy ontologies for different species (削除ここまで) obsolete Detail GitHub Repo stars
(削除) cmf (削除ここまで) (削除) CranioMaxilloFacial ontology (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) dc_cl (削除ここまで) (削除) Dendritic cell (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) dinto (削除ここまで) (削除) The Drug-Drug Interactions Ontology (削除ここまで) CC BY 3.0 (削除) A formal represention for drug-drug interactions knowledge. (削除ここまで) obsolete Detail GitHub Repo stars
(削除) ehda (削除ここまで) (削除) Human developmental anatomy, timed version (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) ehdaa (削除ここまで) (削除) Human developmental anatomy, abstract version (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) emap (削除ここまで) (削除) Mouse gross anatomy and development, timed (削除ここまで) (削除) A structured controlled vocabulary of stage-specific anatomical structures of the mouse (Mus). (削除ここまで) obsolete Detail
(削除) eo (削除ここまで) (削除) Plant Environment Ontology (削除ここまで) CC BY 4.0 (削除) A structured, controlled vocabulary which describes the treatments, growing conditions, and/or study types used in plant biology experime... (削除ここまで) obsolete Detail GitHub Repo stars
(削除) epo (削除ここまで) (削除) Epidemiology Ontology (削除ここまで) (削除) An ontology designed to support the semantic annotation of epidemiology resources (削除ここまで) obsolete Detail
(削除) ero (削除ここまで) (削除) eagle-i resource ontology (削除ここまで) CC BY 2.0 (削除) An ontology of research resources such as instruments. protocols, reagents, animal models and biospecimens. (削除ここまで) obsolete Detail
(削除) ev (削除ここまで) (削除) eVOC (Expressed Sequence Annotation for Humans) (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) fbsp (削除ここまで) (削除) Fly taxonomy (削除ここまで) (削除) The taxonomy of the family Drosophilidae (largely after Baechli) and of other taxa referred to in FlyBase. (削除ここまで) obsolete Detail
(削除) flu (削除ここまで) (削除) Influenza Ontology (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) gro (削除ここまで) (削除) Cereal Plant Gross Anatomy (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) habronattus (削除ここまで) (削除) Habronattus courtship (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) iev (削除ここまで) (削除) Event (INOH pathway ontology) (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) imr (削除ここまで) (削除) Molecule role (INOH Protein name/family name ontology) (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) ipr (削除ここまで) (削除) Protein Domains (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) lipro (削除ここまで) (削除) Lipid Ontology (削除ここまで) (削除) An ontology representation of the LIPIDMAPS nomenclature classification. (削除ここまで) obsolete Detail
(削除) loggerhead (削除ここまで) (削除) Loggerhead nesting (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) mao (削除ここまで) (削除) Multiple alignment (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) mat (削除ここまで) (削除) Minimal anatomical terminology (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) mfo (削除ここまで) (削除) Medaka fish anatomy and development (削除ここまで) (削除) A structured controlled vocabulary of the anatomy and development of the Japanese medaka fish, Oryzias latipes. (削除ここまで) obsolete Detail
(削除) mirnao (削除ここまで) (削除) microRNA Ontology (削除ここまで) CC0 1.0 (削除) An application ontology for use with miRNA databases. (削除ここまで) obsolete Detail
(削除) mo (削除ここまで) (削除) Microarray experimental conditions (削除ここまで) (削除) A standardized description of a microarray experiment in support of MAGE v.1. (削除ここまで) obsolete Detail
(削除) nif_cell (削除ここまで) (削除) NIF Cell (削除ここまで) (削除) Neuronal cell types (削除ここまで) obsolete Detail
(削除) nif_dysfunction (削除ここまで) (削除) NIF Dysfunction (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) nif_grossanatomy (削除ここまで) (削除) NIF Gross Anatomy (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) nmr (削除ここまで) (削除) NMR-instrument specific component of metabolomics investigations (削除ここまで) (削除) Descriptors relevant to the experimental conditions of the Nuclear Magnetic Resonance (NMR) component in a metabolomics investigation. (削除ここまで) obsolete Detail
(削除) obo_rel (削除ここまで) (削除) OBO relationship types (legacy) (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) ogi (削除ここまで) (削除) Ontology for genetic interval (削除ここまで) (削除) An ontology that formalizes the genomic element by defining an upper class genetic interval (削除ここまで) obsolete Detail
(削除) omiabis (削除ここまで) (削除) Ontologized MIABIS (削除ここまで) CC BY 3.0 (削除) An ontological version of MIABIS (Minimum Information About BIobank data Sharing) (削除ここまで) obsolete Detail GitHub Repo stars
(削除) pao (削除ここまで) (削除) Plant Anatomy Ontology (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) pd_st (削除ここまで) (削除) Platynereis stage ontology (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) pgdso (削除ここまで) (削除) Plant Growth and Development Stage (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) plo (削除ここまで) (削除) Plasmodium life cycle (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) propreo (削除ここまで) (削除) Proteomics data and process provenance (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) resid (削除ここまで) (削除) Protein covalent bond (削除ここまで) (削除) For the description of covalent bonds in proteins. (削除ここまで) obsolete Detail
(削除) sao (削除ここまで) (削除) Subcellular anatomy ontology (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) sep (削除ここまで) (削除) Sample processing and separation techniques (削除ここまで) (削除) A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments. (削除ここまで) obsolete Detail
(削除) sopharm (削除ここまで) (削除) Suggested Ontology for Pharmacogenomics (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) tahe (削除ここまで) (削除) Terminology of Anatomy of Human Embryology (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) tahh (削除ここまで) (削除) Terminology of Anatomy of Human Histology (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) tao (削除ここまで) (削除) Teleost Anatomy Ontology (削除ここまで) CC0 1.0 (削除) Multispecies fish anatomy ontology. Originally seeded from ZFA, but intended to cover terms relevant to other taxa (削除ここまで) obsolete Detail
(削除) vhog (削除ここまで) (削除) Vertebrate Homologous Ontology Group Ontology (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) vsao (削除ここまで) (削除) Vertebrate Skeletal Anatomy Ontology- (削除ここまで) (削除) Vertebrate skeletal anatomy ontology. (削除ここまで) obsolete Detail
(削除) ypo (削除ここまで) (削除) Yeast phenotypes (削除ここまで) (削除) (削除ここまで) obsolete Detail
(削除) zea (削除ここまで) (削除) Maize gross anatomy (削除ここまで) (削除) (削除ここまで) obsolete Detail

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