Status
Public on Jun 22, 2009
Title
Rat liver. Control vs. Chemical treated, 3 days
Experiment type
Expression profiling by array
Summary
The final goal of this study is to develop a short term and highly accurate prediction method of carcinogenicity based on gene expression profile of rats administrated by carcinogens.
We conducted 3 days-, 14 days- and 28 days-repeated dose experiments in male F344 rats with 47 carcinogens and 26 non-carcinogens, and the gene expression profiles in liver were investigated by custom glass microarrays.
Supplementary file "73 Compounds for training" indicates 47 carcinogens and 26 non-carcinogens.
Supplementary file "15 Compounds for test" lists the other compounds which are for test.
Overall design
Two-condition experiment, control vs. chemical treated rat liver. Biological replicates: 4 control, 4 treated, control samples were pooled. One replicate per array.
Submission date
May 29, 2009
Last update date
Mar 21, 2012
Contact name
Kayo Sumida
Phone
81-6-6466-5325
Organization name
Sumitomo Chemical Co., Ltd.
Department
Environmental Health Science Laboratory
Lab
Biochemistry and Metabolism Group
Street address
1-98, Kasugadenaka 3-chome, Konohana-ku
City
Osaka
ZIP/Postal code
554-8558
Country
Japan
This SubSeries is part of SuperSeries:
GSE16752
Rat liver. Control vs. Chemical treated: time course
Relations
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Format
Supplementary file
Size
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File type/resource
GSE16340_15_Compounds_for_test.pdf.gz
6.2 Kb
(ftp) (http)
PDF
GSE16340_73_Compounds_for_training.pdf.gz
34.7 Kb
(ftp) (http)
PDF
Processed data included within Sample table