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CmdMol.h File Reference

#include <string.h>
#include "Command.h"
#include "VMDApp.h"

Go to the source code of this file.

Compounds

class CmdMolActive

make the Nth molecule 'active' or 'inactive'. More...

class CmdMolAddRep

add a new representation to the specified molecule. More...

class CmdMolBondsRecalc

re-analyze structure after atom names, bonds, etc have been modified. More...

class CmdMolCancel

Cancel the loading/saving of a coordinate file. More...

class CmdMolChangeRep

change the representation to the current defaults. More...

class CmdMolChangeRepItem

change 1 representation characteristic for the specified mol. More...

class CmdMolColor

set the current atom coloring method in moleculeList. More...

class CmdMolDelete

delete the Nth molecule in the molecule List. More...

class CmdMolDeleteRep

delete a representation for the specified molecule. More...

class CmdMolDrawFrames

Set the range of frames to draw for this rep. More...

class CmdMolFix

make the Nth molecule 'fixed' or 'free'. More...

class CmdMolLoad

Notification that a molecule has been created. More...

class CmdMolMaterial

set the current atom material method in moleculeList. More...

class CmdMolNew

Create a new molecule. More...

class CmdMolNumPeriodic

Set the number of periodic images displayed for the selected representation. More...

class CmdMolOn

make the Nth molecule 'on' or 'off'. More...

class CmdMolReanalyze

re-analyze structure after atom names, bonds, etc have been modified. More...

class CmdMolRename

rename a molecule. More...

class CmdMolRep

set the current atom representation in moleculeList. More...

class CmdMolRepColorUpdate

Change the auto-update for the color of the specified rep. More...

class CmdMolRepSelUpdate

Change the auto-update for the selection of the specified rep. More...

class CmdMolScaleMinmax

Set the color scale min/max range for the selected representation. More...

class CmdMolSelect

set the current atom selection in moleculeList. More...

class CmdMolShowInstances

Set which instance images are displayed for the selected representation. More...

class CmdMolShowPeriodic

Set which periodic images are displayed for the selected representation. More...

class CmdMolShowRep

Set the "shown" state for the selected representation. More...

class CmdMolSmoothRep

Set the trajectory smoothing window size for the selected representation. More...

class CmdMolSSRecalc

recalculate secondary structure based on current coordinates. More...

class CmdMolTop

make the Nth molecule 'top'. More...

class CmdMolVolume

Add a new volumetric dataset to the selected molecule. More...