University College Dublin Science Foundation Ireland

Clustal: Multiple Sequence Alignment

Multiple alignment of nucleic acid and protein sequences

Clustal Omega

• Latest version of Clustal - fast and scalable (can align hundreds of thousands of sequences in hours), greater accuracy due to new HMM alignment engine
• Command line/web server only (GUI public beta available soon)

ClustalW/ClustalX

• "Classic Clustal"
• GUI (ClustalX), command line (ClustalW), web server versions available

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