CRAN: Package locuszoomr

locuszoomr: Gene Locus Plot with Gene Annotations

Publication-ready regional gene locus plots similar to those produced by the web interface 'LocusZoom' <https://my.locuszoom.org>, but running locally in R. Genetic or genomic data with gene annotation tracks are plotted via R base graphics, 'ggplot2' or 'plotly', allowing flexibility and easy customisation including laying out multiple locus plots on the same page. It uses the 'LDlink' API <https://ldlink.nih.gov/?tab=apiaccess> to query linkage disequilibrium data from the 1000 Genomes Project and can overlay this on plots <doi:10.1093/bioadv/vbaf006>.

Version: 0.3.8

Depends: R (≥ 3.5)

Imports: AnnotationFilter, BiocGenerics, cowplot, dplyr, ensembldb, GenomeInfoDb, GenomicRanges, gggrid, ggplot2, ggrepel, graphics, grDevices, grid, IRanges, LDlinkR, memoise, plotly, rlang, rtracklayer, zoo

Suggests: AnnotationHub, EnsDb.Hsapiens.v75, knitr, rmarkdown

Published: 2025年03月03日

DOI: 10.32614/CRAN.package.locuszoomr

Author: Myles Lewis ORCID iD [aut, cre]

Maintainer: Myles Lewis <myles.lewis at qmul.ac.uk>

BugReports: https://github.com/myles-lewis/locuszoomr/issues

License: GPL (≥ 3)

URL: https://github.com/myles-lewis/locuszoomr

NeedsCompilation: no

Language: en-gb

Citation: locuszoomr citation info

Materials: README, NEWS

CRAN checks: locuszoomr results

Documentation:

Reference manual: locuszoomr.html , locuszoomr.pdf

Vignettes: locuszoomr (source, R code)

Downloads:

Package source: locuszoomr_0.3.8.tar.gz

Windows binaries: r-devel: locuszoomr_0.3.8.zip, r-release: locuszoomr_0.3.8.zip, r-oldrel: locuszoomr_0.3.8.zip

macOS binaries: r-release (arm64): locuszoomr_0.3.8.tgz, r-oldrel (arm64): locuszoomr_0.3.8.tgz, r-release (x86_64): locuszoomr_0.3.8.tgz, r-oldrel (x86_64): locuszoomr_0.3.8.tgz

Old sources: locuszoomr archive

Linking:

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