Cell-Typing using Variance Adjusted Mahalanobis Distances with Multi-Labeling [R package CAMML version 1.0.0]

CAMML: Cell-Typing using Variance Adjusted Mahalanobis Distances with Multi-Labeling

Creates multi-label cell-types for single-cell RNA-sequencing data based on weighted VAM scoring of cell-type specific gene sets. Schiebout, Frost (2022) <https://psb.stanford.edu/psb-online/proceedings/psb22/schiebout.pdf>.

Version: 1.0.0

Depends: R (≥ 3.6.0)

Imports: VAM, Seurat (≥ 4.0.0), MASS, Matrix (≥ 1.3.3), utils, BiocManager, org.Hs.eg.db, org.Dr.eg.db, org.Mm.eg.db, AnnotationDbi, SeuratObject (≥ 4.0.0), methods, edgeR

Suggests: sctransform (≥ 0.3.2)

Published: 2023年11月13日

DOI: 10.32614/CRAN.package.CAMML

Author: H. Robert Frost [aut], Courtney Schiebout ORCID iD [aut, cre]

Maintainer: Courtney Schiebout <courtney.t.schiebout.gr at dartmouth.edu>

License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]

NeedsCompilation: no

CRAN checks: CAMML results [issues need fixing before 2025年11月15日]

Documentation:

Reference manual: CAMML.html , CAMML.pdf

Vignettes: CAMML_FigureVignette (source)
CAMMLQuick (source)
CAMML (source)
ChIMP (source)

Downloads:

Package source: CAMML_1.0.0.tar.gz

Windows binaries: r-devel: CAMML_1.0.0.zip, r-release: CAMML_1.0.0.zip, r-oldrel: CAMML_1.0.0.zip

macOS binaries: r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): not available, r-oldrel (x86_64): CAMML_1.0.0.tgz

Old sources: CAMML archive

Linking:

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