The Biocaml Library : Biocaml_sam.sexp_of_alignment

alignment = {

 query_template_name: string;

 flags: Flags.t;

 reference_sequence: [ `reference_sequence of reference_sequence

           | `none

           | `name of string ];

 position: int option;

 mapping_quality: int option;

 cigar_operations: cigar_op array;



 next_reference_sequence: [`qname | `none | `name of string

         | `reference_sequence of reference_sequence ];

 next_position: int option;



 template_length: int option;



 sequence: [ `string of string | `reference | `none];

 quality: Phred_score.t array;



 optional_content: optional_content;

}