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Module Biocaml.Fasta (.ml)

module Fasta: Biocaml_fasta

type char_seq = string

type int_seq = int list

type 'a item = {

header :string;

sequence :'a;

}

module Error: sig .. end

Errors.

exception Error of Error.t

val in_channel_to_char_seq_item_stream  : ?buffer_size:int ->
 ?filename:string ->
 ?pedantic:bool ->
 ?sharp_comments:bool ->
 ?semicolon_comments:bool ->
 Pervasives.in_channel -> char_seq item Stream.t

Returns a stream of char_seq items. Initial comments are discarded.
Raises Error in case of any errors.

val in_channel_to_int_seq_item_stream  : ?buffer_size:int ->
 ?filename:string ->
 ?pedantic:bool ->
 ?sharp_comments:bool ->
 ?semicolon_comments:bool ->
 Pervasives.in_channel -> int_seq item Stream.t

Returns a stream of int_seq items. Initial comments are discarded.
Raises Error in case of any errors.

module Result: sig .. end

module Transform: sig .. end

Low-level transforms.

S-expressions

val sexp_of_char_seq  : char_seq -> Sexplib.Sexp.t

val char_seq_of_sexp  : Sexplib.Sexp.t -> char_seq

val sexp_of_int_seq  : int_seq -> Sexplib.Sexp.t

val int_seq_of_sexp  : Sexplib.Sexp.t -> int_seq

val sexp_of_item  : ('a -> Sexplib.Sexp.t) -> 'a item -> Sexplib.Sexp.t

val item_of_sexp  : (Sexplib.Sexp.t -> 'a) -> Sexplib.Sexp.t -> 'a item