Module Biocaml.Bed (.ml)

module Bed: Biocaml_bed

---

type item = string * int * int * Biocaml_table.Row.t  

type parsing_spec = [ `enforce of Biocaml_table.Row.t_type | `strings ] 

module Error: sig .. end

val item_of_line  : how:parsing_spec ->
 Biocaml_lines.item ->
 (item, [> Error.parsing ]) Core.Result.t

val item_to_line  : item -> Biocaml_lines.item 

module Transform: sig .. end

val item_of_sexp  : Sexplib.Sexp.t -> item 

val sexp_of_item  : item -> Sexplib.Sexp.t

val parsing_spec_of_sexp  : Sexplib.Sexp.t -> parsing_spec 

val parsing_spec_of_sexp__  : Sexplib.Sexp.t -> parsing_spec 

val sexp_of_parsing_spec  : parsing_spec -> Sexplib.Sexp.t

Definitions of error types (with sexp)

Basic parsing of a single line.

Basic "printing" of one single item.

Create a Biocaml_transform.t-based parser, while providing the format of the additional columns (default `strings).

Create a Biocaml_transform.t which "prints" BED data (reminder: includes ends-of-line).