Index of modules


A
About [Biocaml]
Accu [Biocaml]
Array [Biocaml_std]

B
Bar [Biocaml]
Bed [Biocaml]
Biocaml
Biocaml_about
General information about the Biocaml library.
Biocaml_accu
A datastructure (based on Hashtbl) to accumulate values.
Biocaml_bar
Affymetrix's BAR files.
Biocaml_bed
BED data.
Biocaml_bpmap
Affymetrix's BPMAP files.
Biocaml_cel
Affymetrix's CEL files.
Biocaml_chrName
Chromosome names.
Biocaml_comments
Comment lines.
Biocaml_common
Commonly needed values; the 'Pervasives' of Biocaml.
Biocaml_fasta
FASTA files.
Biocaml_fastq
FASTQ data.
Biocaml_genomeMap
Indicator function on a genome
Biocaml_gff
GFF files.
Biocaml_histogram
Histograms with polymorphic bin types.
Biocaml_intervalTree
Interval tree (data structure)
Biocaml_invokeCmdline
Biocaml_math
Numeric mathematics.
Biocaml_msg
Consistent printing of errors, warnings, and bugs.
Biocaml_mzData
Read mzData files (mass spectrometry data format).
Biocaml_phredScore
PHRED quality scores.
Biocaml_pos
File positions.
Biocaml_pwm
Position-weight matrix
Biocaml_rSet
Efficient integer sets when many elements expected to be large contiguous sequences of integers.
Biocaml_range
Ranges of contiguous integers (integer intervals).
Biocaml_roc
Performance measurement for binary classification.
Biocaml_romanNum
Roman numerals.
Biocaml_sam
SAM files.
Biocaml_sbml
SBML file parser.
Biocaml_seq
Nucleic acid sequences.
Biocaml_sgr
Sequence Graph (SGR) files.
Biocaml_solexaScore
Solexa quality scores.
Biocaml_std
Biocaml_strandName
Strand names.
Biocaml_table
Tabular data as defined by principal tag 'table'.
Biocaml_tags
Classification of data formats.
Biocaml_track
Track files in UCSC Genome Browser format.
Biocaml_util
Miscellaneous functions that don't fit elsewhere.
Biocaml_wig
WIG data.
Bpmap [Biocaml]
BrowserLines [Biocaml_track]
Browser lines configure the overall display of the Genome Browser when your file is uploaded.

C
Cel [Biocaml]
Char [Biocaml_std]
ChrName [Biocaml]
Comments [Biocaml]
Common [Biocaml]
Counter [Biocaml_accu]

E
Enum [Biocaml_std]

F
Fasta [Biocaml]
Fastq [Biocaml]

G
GenomeMap [Biocaml]
Gff [Biocaml]

H
Histogram [Biocaml]

I
IO [Biocaml_std]
IS [Biocaml_std.IntSet]
IntSet [Biocaml_std]
InvokeCmdline [Biocaml]

L
LMap [Biocaml_genomeMap]
A set of locations with an attached value on each of them
Lines [Biocaml_std]
List [Biocaml_std]

M
M [Biocaml_std.Option]
Make [Biocaml_std.Set]
Math [Biocaml]
Msg [Biocaml_std]

O
Option [Biocaml_std]
Order [Biocaml_std]

P
PMap [Biocaml_std]
PhredScore [Biocaml]
Pos [Biocaml_std]
Pr [Biocaml_std.Tuple]
Precursor [Biocaml_mzData]
Pwm [Biocaml]

R
RSet [Biocaml]
Range [Biocaml]
Roc [Biocaml]
RomanNum [Biocaml]

S
S [Biocaml_std.Set.Make]
Sam [Biocaml]
Sbml [Biocaml]
Selection [Biocaml_genomeMap]
Indicator function on a genome
Seq [Biocaml]
Set [Biocaml_std]
Sgr [Biocaml]
SolexaScore [Biocaml]
StrandName [Biocaml]
Stream [Biocaml_std]
String [Biocaml_std]
StringMap [Biocaml_std]

T
Table [Biocaml]
Tags [Biocaml]
Test [Biocaml_std]
Test [Biocaml_rSet]
Debugging
Tr [Biocaml_std.Tuple]
Track [Biocaml]
TrackLine [Biocaml_track]
Track lines define display attributes.
Tree [Biocaml_msg]
Message tree for more complex messages.
Tuple [Biocaml_std]

U
Util [Biocaml]

W
Wig [Biocaml]
With_monad [Biocaml_std.Option]

AltStyle によって変換されたページ (->オリジナル) /