Module Biocaml_seq_range (.ml)

Range on a sequence, where the sequence is represented by an identifier.

This datatype can be used to represent genomic regions with a triplet (chromosome, start, end) as can be found in say, BED files. The Biocaml_seq_range.Make functor offers some genericity for the choice of the type representing a sequence identifier, while the module offers the most frequent case when the identifier is a simple string.

Most operations on Biocaml_seq_range.t are simple extensions of operations on Biocaml_range.t.

module Biocaml_seq_range: 

module type Identifier = 

include Comparable

include Sexpable

val to_string : t -> string

module Make: 
functor (S : Identifier ) -> 

type t = S.t * Biocaml_range.t  

val make  : S.t -> int -> int -> t Core.Std.Or_error.t

val seq  : t -> S.t

val size  : t -> int

val to_string  : t -> string

val t_of_sexp  : Sexplib.Sexp.t -> t 

val sexp_of_t  : t -> Sexplib.Sexp.t

val compare  : t -> t -> int

include ??

val of_string  : string -> t Core.Std.Or_error.t