STRAP

Intuitive Editor for annotated multiple Sequence and Structure Alignments

Either Java Web Start launch
or Download & Install

In case of problems introduced with the new version, use the Previous Strap version ... as a fall back.

_Archive Interactive JavaScript and HTML5 based multiple sequence alignment for web sites

• Interactively in the browser: Server in the US or Server in Germany
• From the program Strap
• Programmatically

Visualization does not require client side Java News:

• Browser based Web application for desktop PCs and tablet computers (iOS, Andreoid, MS-Mobile) which runs entirely without Java.
  Please cite: Alignment-Annotator web server: rendering and annotating sequence alignments (2014) Nucleic Acids Res
• Feb-2018 new version fixes problems caused by changes of external web services like EBI.
• Mar-2019: Major changes. Simplified installation. Less code size and enhanced speed. Optimized user interface for Windows 10 and MacOSX. Non-attended installation of Unix tools for PDF-Graphics processing.

With this free software you can:

• Use latest bioinformatics tools with an intuitive user interface
• Compare proteins by sequence and 3D-similarity
• Search protein databases
• Underline important sequence positions e.g. phosphorylated or glycosylated residues
• Predict secondary structure, Transmembrane helices and Coiled Coil
• Create high quality figures for publications with PDF (Example), MS-Word (Example), Libre Office, Open Office and Gwrite
• Export to MSF, Clustal, HSSP, Multiple Fasta and Jalview
• Publish interactive protein alignments online with HTML5

More ... Alignment of alpha subunits of the proteaseome

flavodoxin: 3D-superposition of pdb1flv and pdb1ja1. flavodoxin: Amino acids at Flavin binding pocket are drawn as sticks.

Translation of nucleotides into amino acids.

Institut für Biochemie, Charité Berlin