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>>>>> "Frank" == Smith, Frank <F....@te...> writes: Frank> Hello Matplotlib users, I only just discovered Matplotlib Frank> and I'm having great fun with it. Wonderful package. Thank Frank> you to all contributors and maintainers. Frank> I have an application where the data that I want to plot is Frank> only released when it changes. So when this time tagged Frank> data is plotted it should be "flat" until the next data Frank> value that the application receives at which point the line Frank> should go instantaneously vertical to the new y-value, and Frank> then go horizontal until it changes again. Some graphics Frank> packages that I've used can handle this type of data Frank> automatically. I haven't found anything in the Frank> documentation or examples that shows this kind of feature Frank> in Matplotlib. Has anyone implemented a similar type of Frank> data handling application or is there something I've missed Frank> in Matplotlib? Any help or direction to this newbie would Frank> be very appreciated. Here is an example that does something close to what you are trying to do. It takes advantage of the new animation drawing techniques described at http://www.scipy.org/wikis/topical_software/Animations and requires matplotlib CVS. These techniques work with GTKAgg, WXAgg and TkAgg. To do this right, you will probably want to take advantage of your GUI event handling framework, eg an idle handler or a timer. The example below uses the gtk idle handler, but this approach should work fine with other toolkits. There are some refinements. Eg you could make the redrawing more efficient potentially by narrowing the bbox you want to redraw in the call to self.canvas.blit(self.ax.bbox). You could also tweak this to preserve the old line (eg the 0-10 second data) while you are redrawing the new line (eg the 10-20 second data) in the way many oscilloscopes do. But this should get you started. If you refine it or generalize it, please post the fruits of your labors. import gobject, gtk import matplotlib matplotlib.use('GTKAgg') import matplotlib.numerix as nx from matplotlib.lines import Line2D class Scope: def __init__(self, ax, maxt=10, dt=0.01): self.ax = ax self.canvas = ax.figure.canvas self.dt = dt self.maxt = maxt self.tdata = [0] self.ydata = [0] self.line = Line2D(self.tdata, self.ydata, animated=True) self.ax.add_line(self.line) self.background = None self.canvas.mpl_connect('draw_event', self.update_background) self.ax.set_ylim(-.1, 1.1) self.ax.set_xlim(0, self.maxt) def update_background(self, event): self.background = self.canvas.copy_from_bbox(self.ax.bbox) def emitter(self, p=0.01): 'return a random value with probability p, else 0' v = nx.mlab.rand(1) if v>p: return 0. else: return nx.mlab.rand(1) def update(self, *args): if self.background is None: return True y = self.emitter() lastt = self.tdata[-1] if lastt>self.tdata[0]+self.maxt: # reset the arrays self.tdata = [self.tdata[-1]] self.ydata = [self.ydata[-1]] self.ax.set_xlim(self.tdata[0], self.tdata[0]+self.maxt) self.ax.figure.canvas.draw() self.canvas.restore_region(self.background) t = self.tdata[-1] + self.dt self.tdata.append(t) self.ydata.append(y) self.line.set_data(self.tdata, self.ydata) self.ax.draw_artist(self.line) self.canvas.blit(self.ax.bbox) return True from pylab import figure, show fig = figure() ax = fig.add_subplot(111) scope = Scope(ax) gobject.idle_add(scope.update) show()
Hello Matplotlib users, I only just discovered Matplotlib and I'm having great fun with it. Wonderful package. Thank you to all contributors and maintainers. I have an application where the data that I want to plot is only released when it changes. So when this time tagged data is plotted it should be "flat" until the next data value that the application receives at which point the line should go instantaneously vertical to the new y-value, and then go horizontal until it changes again. Some graphics packages that I've used can handle this type of data automatically. I haven't found anything in the documentation or examples that shows this kind of feature in Matplotlib. Has anyone implemented a similar type of data handling application or is there something I've missed in Matplotlib? Any help or direction to this newbie would be very appreciated. Thanks, Frank
On Wed, 2005年08月31日 at 08:15 +0200, Sascha GL wrote: > > As far as I know (and could very well be wrong) > > libpng requires a FILE*, which StringIO and cStringIO do not provide. > > I think this is exactly the reason why printing to stdout fails. > > Well, if anybody has any other idea I'd be very grateful. I posted this to the list a few days ago: Using the agg backend you can obtain an RGBA buffer or RGB string which can then be loaded as a PIL Image for processing. I've adapted a the examples/agg_oo.py to demonstrate. ---- from matplotlib.backends.backend_agg \ import FigureCanvasAgg as FigureCanvas from matplotlib.figure import Figure import Image fig = Figure() canvas = FigureCanvas(fig) ax = fig.add_subplot(111) ax.plot([1,2,3]) ax.set_title('hi mom') ax.grid(True) ax.set_xlabel('time') ax.set_ylabel('volts') canvas.draw() size = canvas.get_width_height() usebuffer = True if usebuffer: # Load the agg buffer directly as the source of the PIL image # - could be less stable as agg and PIL share memory. buf = canvas.buffer_rgba() im = Image.frombuffer('RGBA', size, buf, 'raw', 'RGBA', 0, 1) else: # Save the agg buffer to a string and load this into the PIL image. buf = canvas.tostring_rgb() im = Image.fromstring('RGB', size, buf, 'raw', 'RGB', 0, 1) im.show() ---- If you are using a recent CVS version of mpl you will need to change buffer_rgba() to buffer_rgba(0,0). Nick
> As far as I know (and could very well be wrong) > libpng requires a FILE*, which StringIO and cStringIO do not provide. I think this is exactly the reason why printing to stdout fails. Well, if anybody has any other idea I'd be very grateful. Sascha -- 5 GB Mailbox, 50 FreeSMS http://www.gmx.net/de/go/promail +++ GMX - die erste Adresse für Mail, Message, More +++
>>>>> "Sascha" == Sascha <sas...@gm...> writes: Sascha> I am writing a web server app that creates charts among Sascha> other things. I am trying to get rid of the temporary file Sascha> that I use to transmit the figures created with matplotlib Sascha> to the actual web server. Although print_figure says "If Sascha> filename is a fileobject, write png to file object (thus Sascha> you can, for example, write the png to stdout)" I can't Sascha> successfully write anything to stdout. Anyone knows an Sascha> example or can give me some hint what I can do to get rid Sascha> of the tempfile? Short answer: no known way to do this currently, though we'd like to figure it out. As far as I know (and could very well be wrong) libpng requires a FILE*, which StringIO and cStringIO do not provide. JDH
Hi! Indeed, I misunderstood documentation and installed only one package from two (Numeric and numarray). After installation of Numeric and devels for tcl and tk installation went smoothly. Thank you Alex Schwarzenberg-Czerny On 2005年8月30日, Fernando Perez wrote: > Aleksander Schwarzenberg-Czerny wrote: > > > src/_transforms.cpp:8:34: Numeric/arrayobject.h: No such file or directory > > > Do I miss some required package? > > First, check whether you actually have numeric installed: > > planck[python]> python -c 'import Numeric;print Numeric.__version__' > 23.7 > > If that works, it means that you have installed the Numeric headers in some > non-standard location. On my system, they live in: > > planck[python]> locate arrayobject.h > /usr/include/python2.3/Numeric/arrayobject.h > > > I believe by default, distutils adds automatically /path/to/include/python to > the include file search path (via -I), but if you've installed Numeric in some > non-standard location, that automatic search may fail. I don't see > immediately a way to tell distutils to add specific extra paths, but there may > be one. The cheap fix is to copy the Numeric/*.h directory over to the > standard python location for headers in your system. > > Cheers, > > f >
Aleksander Schwarzenberg-Czerny wrote: > src/_transforms.cpp:8:34: Numeric/arrayobject.h: No such file or directory > Do I miss some required package? First, check whether you actually have numeric installed: planck[python]> python -c 'import Numeric;print Numeric.__version__' 23.7 If that works, it means that you have installed the Numeric headers in some non-standard location. On my system, they live in: planck[python]> locate arrayobject.h /usr/include/python2.3/Numeric/arrayobject.h I believe by default, distutils adds automatically /path/to/include/python to the include file search path (via -I), but if you've installed Numeric in some non-standard location, that automatic search may fail. I don't see immediately a way to tell distutils to add specific extra paths, but there may be one. The cheap fix is to copy the Numeric/*.h directory over to the standard python location for headers in your system. Cheers, f
Aleksander Schwarzenberg-Czerny wrote: > Dear matplotlib Pundits, > I am trying to install matplotlib-0.83.2 on my FedoraCore3 linux. > It seems I got installed all required packages (including pygtk2 and gtk2) > and the corresponding devel packages. After running > python setup.py build > I got many messages, terminated with the following error message: > ++/3.4.4/functional:54, > from src/_transforms.cpp:1: > /usr/include/features.h:150:1: warning: this is the location of the > previous definition > src/_transforms.cpp:8:34: Numeric/arrayobject.h: No such file or directory > Do I miss some required package? Numeric. http://numeric.scipy.org -- Robert Kern rk...@uc... "In the fields of hell where the grass grows high Are the graves of dreams allowed to die." -- Richard Harter
Dear matplotlib Pundits, I am trying to install matplotlib-0.83.2 on my FedoraCore3 linux. It seems I got installed all required packages (including pygtk2 and gtk2) and the corresponding devel packages. After running python setup.py build I got many messages, terminated with the following error message: ++/3.4.4/functional:54, from src/_transforms.cpp:1: /usr/include/features.h:150:1: warning: this is the location of the previous definition src/_transforms.cpp:8:34: Numeric/arrayobject.h: No such file or directory src/_transforms.cpp: In member function `Py::Object Bbox::update_numerix(const Py::Tuple&)': src/_transforms.cpp:436: error: `PyArrayObject' undeclared (first use this function) src/_transforms.cpp:436: error: (Each undeclared identifier is reported only once for each function it appears in.) ... src/_transforms.cpp:1974: error: `import_array' undeclared (first use this function) error: command 'gcc' failed with exit status 1 Do I miss some required package? Alex Schwarzenberg-Czerny
david> I have different lines (at least two) that I would like to david> update and also hide/show and I expected that autoscaling david> will take all these aspects (updated data, hiden data) to david> scale the graph to all visible data. david> Furthermore I use the sharey stuff that complicated a bit the= story Thank you very much John. It works ! Here is the final version of the algorithm: line_list is the list of line >ignore =3D True >for line in (line_list): > if not line.get_visible(): continue > self.ax.dataLim.update_numerix( line.get_xdata(), > line.get_ydata(), > ignore ) > ignore =3D False >self.ax.autoscale_view() Note: we cannot use update_datalim_numerix() because "ignore" is not an a= rgument but using dataLim.update_numerix is ok. This version allows to avoid problem if the fist line is not visible (compared to your original version) Same function applied to the second axes which share the y axis and everything is perfect :-) What about adding this function to the axes class using the line list ava= ilable? Should give something like: def autoscale_visible_lines(self): ignore =3D True for line in (self.lines): if not line.get_visible(): continue self.dataLim.update_numerix( line.get_xdata(), line.get_ydata(), ignore ) ignore =3D False self.autoscale_view() Thanks for your help and your amazing matplotlib ! Best regards, David Selon John Hunter <jdh...@ac...>: > If you have a list of lines that you want to pass to the autoscaler, > and have it operate on that list only (ignoring previous settings) do > the following > > First update your line data and then create a list of lines that you > want to autoscale for. The ignore setting will be True for the first > line in the list which will cause it to ignore it's history. Thus the > datalim will be updated to bound only the lines in the list "lines" > > for i,line in enumerate(lines): > ignore =3D i=3D=3D0 > if not line.get_visible(): continue > x =3D asarray(line.get_xdata()) > y =3D asarray(line.get_ydata()) > ax.update_datalim_numerix(x, y, ignore) > ax.autoscale_view() > > You should be able to do this separately for each of your two axes > (even if they are sharing the x axes, their y axes is independent). > > If you are still having trouble after trying this, please post a > complete example. > > JDH >
I am writing a web server app that creates charts among other things. I am trying to get rid of the temporary file that I use to transmit the figures created with matplotlib to the actual web server. Although print_figure says "If filename is a fileobject, write png to file object (thus you can, for example, write the png to stdout)" I can't successfully write anything to stdout. Anyone knows an example or can give me some hint what I can do to get rid of the tempfile? Thanks, Sascha
Hello, No actually it doesn't work exactly as I expected. I have different lines (at least two) that I would like to update and also hide/show and I expected that autoscaling will take all these aspects (updated data, hiden data) to scale the graph to all visibl= e data. The main problem is that old data limit is kept or totaly lost. The axes scaling doesn't seem to work with the list of lines, but is updated each time you add a line to the axes (as far as I can undestand from the source code). So the scale can only be increased but never decreased. Am I write or wrong ? Furthermore I use the sharey stuff that complicated a bit the story. So I don't think I can easelly do what I want using the axes class. Maybe I should calculate the scaling in my software and set the min/max v= alue. If one of you have another idea please let me know. Thanks for your help, David Selon John Hunter <jdh...@ac...>: > >>>>> "David" =3D=3D David <dav...@fr...> writes: > David> I use the class library and I run into trouble with > David> autoscaling. > > David> I expected that autoscale_view() function of axes class > David> would do autoscaling. But if I update the data using > David> set_data(), set_xdatat() or set_ydata() (of lines object) > David> and I call autoscale_view() of the corresponding axes and > David> then redraw the canvas, the scale is not changed and some > David> data points are thus out of the picture. > > The axes keeps a copy of the "dataLim" and won't automatically know if > you change the line's data. You need to call > > ax.update_datalim_numerix(x, y, ignore) > > where x and y are the numerix arrays you pass to line.set_data. > > If ignore is True, the previous data passed to the axes will be > ignored in computing the new datalim. If False, the datalim will > include the previous data and the current data you are passing it. > > After this, a call to > > ax.autoscale_view() > > should work as you expect. > > JDH >
>>>>> "Schindler" == Schindler Benjamin <ben...@si...> writes: Schindler> Hi In my program, I do a lot of axis changes and Schindler> redraws / resizes. The redraw speed of matplotlib seems Schindler> very bad at best - is there anything I can do to make Schindler> it go faster? Start here : http://matplotlib.sourceforge.net/faq.html#SLOW The best thing you can do is create a sample application that you feel is slow that can be run on our machines -- eg create a dummy data server to replace for your real data server. Then run your script with some timing information to get an estimate of how fast the draw is on your system (eg frames/second, see examples/dynamic_image_gtkagg.py for one example which uses timing). That way we can see if we are getting comparable performance numbers and more importantly, may be able to suggest some improvements. Generally the three things that make drawing slow are * creating too many objects (use collections instead). * using a backend which has a slow Agg->GUI widget transfer speed. I just checked in Ken's patch which fixes this for WXAgg. * redrawing the entire canvas when you only need to redraw a selected artist or two. See http://www.scipy.org/wikis/topical_software/Animations -- Ken's patch in CVS also added support for this kind of redrawing to WXAgg. Hope this helps, JDH
> Is this what you are looking for : > legend([""], [""]) > > - Thomas Thanks, this works but is not really a solution. As you see (below), I have to add the [''] to the list to prevent it from crashing. To me, this is a workaround, not a solution. I can use it for now, but this should be fixed in matplotlib imho enabled_sources = [x for x in self.data if self.data[x][1] == True] self.figure.legends = [] self.figure.legend(map(lambda x: self.data[x][0], enabled_sources), enabled_sources + [''], 'upper right', shadow=True)
On Tuesday 30 August 2005 1:37 am, si...@sc... wrote: > > Try increasing the tick.major.pad in your rc settings > > Much obliged, Darren, that was just what I needed. Another small > imposition, if I may: I'm using twinx() to get a second y-axis for a plot. > It works fine, except that the tick marks from the first axis are also > present on the right-hand side, causing a bit of a mess. Is there a way to > suppress printing the tick marks just for the right plot side? All the > reading I've done leads me to believe that this is an all-or-nothing > affair, as I can only suppress tick marks by setting yticks to the empty > set, and this of course removes all the tick marks on that axis. Am I > missing something obvious here? I noticed that the two_scales.py demo > exhibits the same behaviour (juxtaposing the two sets of ticks on the right > side). try this: plot([1,2,3,4]) gca().yaxis.tick_left() twinx() plot([11,12,13,14]) Darren
Hi I'm using dynamic legends but Legend doesn't seem to be able to handle empty legends. I know that I could just refuse to do an empty legend, but I still would call this behaviour a bug: from pylab import * t = arange(0.1, 4, 0.1) s = exp(-t) e = 0.1*abs(randn(len(s))) figure(1) l0, errlines0 = errorbar(t, s, e, fmt="bo-") l1, errlines1 = errorbar(t, s+1, e, fmt="ro-") xlabel("Distance (m)") ylabel("Height (m)") title("Mean and standard error as a function of distance") legend([], []) show() With: Traceback (most recent call last): File "test.py", line 12, in ? legend([], []) File "C:\PROGRA~1\python23\Lib\site-packages\matplotlib\pylab.py", line 2315, in legend ret = gca().legend(*args, **kwargs) File "C:\PROGRA~1\python23\Lib\site-packages\matplotlib\axes.py", line 2044, in legend self.legend_ = Legend(self, handles, labels, loc, **kwargs) File "C:\PROGRA~1\python23\Lib\site-packages\matplotlib\legend.py", line 181, in __init__ left, top = self.texts[-1].get_position() IndexError: list index out of range This shouldn't be the case - right?
Hi In my program, I do a lot of axis changes and redraws / resizes. The redraw speed of matplotlib seems very bad at best - is there anything I can do to make it go faster? Thanks Benjamin Schindler
I have sortof solved my problem. The main problem was, that = autoscrolling doesn't seem to work the way it should - now paired with a little bug = that got hidden made these problems for me. Since I have to control my y and = x axis closely anyway, There is no real problem anymore.=20 Thanks for all the help.=20 -----Urspr=FCngliche Nachricht----- Von: John Hunter [mailto:jdh...@ac...]=20 Gesendet: Dienstag, 30. August 2005 00:22 An: Benjamin Schindler Cc: 'Werner F. Bruhin'; mat...@li... Betreff: Re: [Matplotlib-users] Re: Line2D and wx Backend >>>>> "Benjamin" =3D=3D Benjamin Schindler <bsc...@st...> = writes: Benjamin> Hi Sortof, but not really. I've just discovered Benjamin> something reeeally interesting. Benjamin> I've produced a sample app that exhibits this Benjamin> behaviour. However, monitor.py (in plugins/wx) still Benjamin> depends on twisted.spread.pb. If I comment out that Benjamin> import, it all runs fine. (you can add data with the a Benjamin> button and the slider in the left pane) It's hard for me Benjamin> guess who is causing the troubles - whether it's Benjamin> matplotlib not beeing able to handle the twisted Benjamin> threading or twisted breaking matplotlib - I don't know Yep, this looks like a threading problem. Could be a tough nut to crack. Sorry, but I don't have any concrete suggestions for you. Perhaps someone on the wx list would have some idea how to make wx events play nicely with twisted threads. JDH
> Try increasing the tick.major.pad in your rc settings Much obliged, Darren, that was just what I needed. Another small imposition, if I may: I'm using twinx() to get a second y-axis for a plot. It works fine, except that the tick marks from the first axis are also present on the right-hand side, causing a bit of a mess. Is there a way to suppress printing the tick marks just for the right plot side? All the reading I've done leads me to believe that this is an all-or-nothing affair, as I can only suppress tick marks by setting yticks to the empty set, and this of course removes all the tick marks on that axis. Am I missing something obvious here? I noticed that the two_scales.py demo exhibits the same behaviour (juxtaposing the two sets of ticks on the right side). Cheers and thanks, Mike Sipior
John Hunter wrote: >>>>>>"Vidar" == Vidar Gundersen <vid...@37...> writes: >>>>>> >>>>>> > > Vidar> thanks for providing this, i hope this will be included in > Vidar> the matplotlib distribution, along with your script for > Vidar> previewing and listing all colormaps? (see modification of > Vidar> original code below.) > >I haven't been able to find any licensing information for the color >scales at colorbrewer or http://geography.uoregon.edu/datagraphics . >Does anyone know what their license is, if any? > >JDH > > > John: Colorbrewer uses an apache-style license (http://www.personal.psu.edu/faculty/c/a/cab38/ColorBrewer/ColorBrewer_updates.html). I don't know about the DataGraphics color schemes. -Jeff -- Jeffrey S. Whitaker Phone : (303)497-6313 NOAA/OAR/CDC R/CDC1 FAX : (303)497-6449 325 Broadway Web : http://www.cdc.noaa.gov/~jsw Boulder, CO, USA 80305-3328 Office: Skaggs Research Cntr 1D-124
>>>>> "Vidar" == Vidar Gundersen <vid...@37...> writes: Vidar> thanks for providing this, i hope this will be included in Vidar> the matplotlib distribution, along with your script for Vidar> previewing and listing all colormaps? (see modification of Vidar> original code below.) I haven't been able to find any licensing information for the color scales at colorbrewer or http://geography.uoregon.edu/datagraphics . Does anyone know what their license is, if any? JDH
>>>>> "Pierre" == Pierre Hanser <ha...@cl...> writes: Pierre> hello it seems that the two examples date_demo1 et Pierre> date_demo2 do not work if LC_TIME is not C. At least, they Pierre> don't work with fr_FR.UTF-8 nor with fr_FR. Pierre> Is this a known problem? is it a python or a matplotlib Pierre> problem? -- Pierre Could you be more specific about what you mean "don't work"? Do they crash, do they have the wrong timezone, are the date strings formatted improperly? JDH
>>>>> "Benjamin" == Benjamin Schindler <bsc...@st...> writes: Benjamin> Hi Sortof, but not really. I've just discovered Benjamin> something reeeally interesting. Benjamin> I've produced a sample app that exhibits this Benjamin> behaviour. However, monitor.py (in plugins/wx) still Benjamin> depends on twisted.spread.pb. If I comment out that Benjamin> import, it all runs fine. (you can add data with the a Benjamin> button and the slider in the left pane) It's hard for me Benjamin> guess who is causing the troubles - whether it's Benjamin> matplotlib not beeing able to handle the twisted Benjamin> threading or twisted breaking matplotlib - I don't know Yep, this looks like a threading problem. Could be a tough nut to crack. Sorry, but I don't have any concrete suggestions for you. Perhaps someone on the wx list would have some idea how to make wx events play nicely with twisted threads. JDH
>>>>> "David" == David <dav...@fr...> writes: David> Hi all, and thanks for amazing matplotlib. I devellop my David> data processing / plotting software using glade, pygtk, David> scipy and matplotlib 0.83.2. David> I use the class library and I run into trouble with David> autoscaling. David> I expected that autoscale_view() function of axes class David> would do autoscaling. But if I update the data using David> set_data(), set_xdatat() or set_ydata() (of lines object) David> and I call autoscale_view() of the corresponding axes and David> then redraw the canvas, the scale is not changed and some David> data points are thus out of the picture. David> Do I miss or misunderstand something ? The axes keeps a copy of the "dataLim" and won't automatically know if you change the line's data. You need to call ax.update_datalim_numerix(x, y, ignore) where x and y are the numerix arrays you pass to line.set_data. If ignore is True, the previous data passed to the axes will be ignored in computing the new datalim. If False, the datalim will include the previous data and the current data you are passing it. After this, a call to ax.autoscale_view() should work as you expect. JDH
Hi all, and thanks for amazing matplotlib. I devellop my data processing / plotting software using glade, pygtk, scipy and matplotlib 0.83.2. I use the class library and I run into trouble with autoscaling. I expected that autoscale_view() function of axes class would do autoscaling. But if I update the data using set_data(), set_xdatat() or set_ydata() (of lines object) and I call autoscale_view() of the corresponding axes and then redraw the canvas, the scale is not changed and some data points are thus out of the picture. Do I miss or misunderstand something ? Regards, David