NIPY changelog

Changelog History

Page 1

• v1.6.0

  November 28, 2020

• v1.5.1

  August 16, 2020

• v1.5.0 Changes

  June 03, 2020

  1.5.0 (June 03, 2020)

  DOI

  🆕 New feature release in the 1.5.x series.

  🚀 In this release, the example scripts have been split out into their own package: niflow-nipype1-examples.

  (Full changelog)

  • FIX: volterra_expansion_order documentation error (#3213)
  • 🛠 FIX: BET incorrect output paths (#3214)
  • 🛠 FIX: Terminal output in report.rst spreads one line per character (#3220)
  • 🛠 FIX: Allow parsing freesurfer 7 version string (#3216)
  • 🛠 FIX: Use PackageInfo to get NiftyReg version (#3194)
  • 🛠 FIX: Partial rollback of N4BiasFieldCorrection (#3188)
  • 🛠 FIX: ANTs' tools maintenance overhaul (#3180)
  • 🛠 FIX: load_resultfile crashes if open resultsfile from crashed job (#3182)
  • 🛠 FIX: FSL model.py make multiple F-tests (#3166)
  • ⏪ ENH: Restore ants.legacy interfaces (#3222)
  • ENH: Add "TruncateImageIntensity" operation to ants.utils.Image.Math (#3210)
  • ENH: SPM NewSegment multi-channel segmentation (#3162)
  • ENH: Add reverse-ordered transform lists to ants.Registration outputs (#3192)
  • 🐎 ENH: Improve workflow connect performance (#3184)
  • ENH: Add ConstrainedSphericalDeconvolution interface to replace EstimateFOD for MRtrix3's dwi2fod (#3176)
  • ENH: Detect values for EulerNumber interface (#3173)
  • 🚚 ENH: Remove examples from repository (#3172)
  • ✅ TEST: Clean up tests (#3195)
  • ✅ TEST: Mock terminal output before testing changing default value (#3193)
  • ✅ REF: make invocations of python and pytest consistent with the one used/desired python (#3208)
  • REF: Prefer math.gcd to hand-rolled Euclid's algorithm (#3177)
  • 🚚 REF: Removed all uses of numpy_mmap (#3121)
  • DOC: Sphinx 3 compatibility (#3206)
  • ⚡️ DOC: Update links, typos in contributing guide (#3160)
  • ⚡️ DOC: Update SelectFiles docstring to match actual behavior (#3041)
  • ⚡️ DOC: Updated .zenodo.json file (#3167)
  • ⚡️ DOC: Update .zenodo.json (#3165)
  • MNT: Permit recent nilearns (#2841)
  • ✅ MNT: Test Python 3.8 (#3154)
  • ⏪ MNT: Restore ReadTheDocs (#3207)
  • ⚡️ MNT: Update Zenodo ordering based on commit count (#3169)

• v1.5.0.rc1

  March 15, 2020

• v1.4.2 Changes

  February 14, 2020

  1.4.2 (February 14, 2020)

  DOI

  🐛 Bug-fix release in the 1.4.x series. Contains patches to accommodate API changes in Traits 6.0.

  Full changelog

  • 🛠 FIX: Allow fsl.MultipleRegressDesign to create multiple F-tests (#3166)
  • 🛠 FIX: Reliably parse SGE job IDs in the presence of warnings (#3168)
  • 🛠 FIX: Move TraitType import, handle API change for NoDefaultSpecified (#3159)

• v1.4.1 Changes

  January 27, 2020

  1.4.1 (January 27, 2020)

  DOI

  Full changelog

  • 🛠 FIX: DataSink to S3 buckets (#3130)
  • 🛠 FIX: improve version checking for nodes of workflows (#3152)
  • 🛠 FIX: mapnode to generate result file when crashes in single node mode (#3143)
  • 🛠 FIX: Can't seem to import workflows from niflows in CircleCI (#3134)
  • 🛠 FIX: Repair aftermath of docs refactor (#3133)
  • FIX: change ANTS number_of_time_steps from Float to Int (#3118)
  • DOC: Revise generation of examples to work in RTD (#3132)
  • DOC: Bring examples generation back to doc/conf.py (#3131)
  • 📚 DOC: Documentation overhaul (#3124)
  • 📚 DOC: Deep revision of documentation building (#3120)
  • DOC: Deduplicate code for Sphinx's APIdoc generation (#3119)
  • ⚡️ MNT: Update requirements.txt post-1.4 (#3153)

• v1.4.0 Changes

  December 20, 2019

  1.4.0 (December 20, 2019)

  DOI

  Full changelog

  • 🛠 FIX: Mark strings containing regex escapes as raw (#3106)
  • 🚀 ENH: Pacify DeprecationWarnings caused by nibabel 3 pre-release (#3099)
  • ENH: Allow Nipype configuration directory to be specified with NIPYPE_CONFIG_DIR environment variable (#3073)
  • ENH: Add options and outputs to fsl.Eddy interface (#3034)
  • ENH: Add skull_file output to fsl.BET interface (#3095)
  • RF: Drop various remaining compatibilities for Python < 3.5 (#2831)
  • 🚧 DOC: Add Python 2 statement to README, reference maintenance branch in CONTRIBUTING (#3115)
  • DOC: Miss underline before cmd in example code (#3107)
  • STY: Black (#3096)
  • ✅ MNT: Set junit_family to suppress pytest warning (#3111)
  • MNT: Fix Dorota Jarecka ORCID (#3100)
  • 👍 MNT: Drop Python 2 support (#2654)

• v1.3.2

  January 06, 2020

• v1.3.1 Changes

  November 13, 2019

  1.3.1 (November 12, 2019)

  • 🛠 FIX: Restore checking traits or bunch (#3094)

• v1.3.0 Changes

  November 12, 2019

  1.3.0 (November 11, 2019)

  DOI

  Full changelog

  • 🛠 FIX: Fixed typo in QwarpInputSpec Trait description (#3079)
  • FIX: Restore AFNICommand._get_fname, required by some interfaces (#3071)
  • 🛠 FIX: Remove asynchronous chdir callback (#3060)
  • 🛠 FIX: Minimize scope for directory changes while loading results file (#3061)
  • ENH: Minimize the number of calls to _load_results when populating inputs (#3075)
  • 🔨 ENH: Refactor savepkl/loadpkl - add a window for loadpkl to wait for the file (#3089)
  • ENH: Add "ExportFile" interface as simple alternative to "DataSink" (#3054)
  • ENH: Allow nipype.cfg in cwd to be read even if ~/.nipype does not exist (#3072)
  • 💅 ENH: Add precommit information for contributors and pre-commit style (#3063)
  • ENH: Delay etelemetry for non-interactive sessions, report bad versions (#3049)
  • ENH: Run memoized check_version at REPL import, Node/Workflow/Interface init (#30)
  • RF: Provide functions to augment old Path.mkdir, Path.resolve methods (#3050)
  • RF: Redirect nipype.workflows to niflow.nipype1.workflows (#3067)
  • ✅ TST: Skip dcm2niix test if data fails to download (#3059)
  • ✅ TST: dcm2niix test fix (#3058)
  • 👍 MAINT: Drop Python 3.4 support (#3062)
  • CI: make specs on Travis (#3066)

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